PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
53551-53600 / 86044 show all | |||||||||||||||
| anovak-vg | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 21.3904 | 21.7391 | 21.0526 | 62.0000 | 5 | 18 | 8 | 30 | 16 | 53.3333 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 31.8686 | 65.5405 | 21.0526 | 51.2162 | 97 | 51 | 76 | 285 | 285 | 100.0000 | |
| ciseli-custom | INDEL | C1_5 | segdup | * | 0.0000 | 0.0000 | 21.0526 | 98.7821 | 0 | 0 | 4 | 15 | 4 | 26.6667 | |
| gduggal-snapfb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 34.2641 | 93.9894 | 20.9509 | 81.3237 | 1423 | 91 | 1507 | 5686 | 93 | 1.6356 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 7.2121 | 4.3609 | 20.8333 | 84.0266 | 29 | 636 | 40 | 152 | 95 | 62.5000 | |
| ghariani-varprowl | INDEL | D16_PLUS | HG002compoundhet | * | 18.0085 | 15.8906 | 20.7778 | 37.7809 | 372 | 1969 | 374 | 1426 | 1417 | 99.3689 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 17.7419 | 15.4930 | 20.7547 | 46.1929 | 22 | 120 | 22 | 84 | 84 | 100.0000 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 18.9766 | 17.5155 | 20.7036 | 55.4928 | 368 | 1733 | 359 | 1375 | 1359 | 98.8364 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 6.1644 | 3.6217 | 20.6897 | 83.3652 | 18 | 479 | 18 | 69 | 58 | 84.0580 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 20.6897 | 88.6719 | 0 | 0 | 6 | 23 | 7 | 30.4348 | |
| gduggal-snapfb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 33.9862 | 95.3401 | 20.6789 | 83.3507 | 757 | 37 | 792 | 3038 | 37 | 1.2179 | |
| anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 34.1463 | 100.0000 | 20.5882 | 69.9115 | 1 | 0 | 7 | 27 | 22 | 81.4815 | |
| jpowers-varprowl | INDEL | * | HG002compoundhet | homalt | 33.5403 | 91.1079 | 20.5534 | 62.6200 | 625 | 61 | 624 | 2412 | 2157 | 89.4279 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 18.1575 | 16.2675 | 20.5446 | 86.8404 | 163 | 839 | 166 | 642 | 34 | 5.2960 | |
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 33.1034 | 85.7143 | 20.5128 | 82.6667 | 6 | 1 | 8 | 31 | 1 | 3.2258 | |
| gduggal-bwafb | INDEL | * | HG002compoundhet | homalt | 33.7522 | 95.9184 | 20.4793 | 75.1027 | 658 | 28 | 658 | 2555 | 2524 | 98.7867 | |
| ghariani-varprowl | INDEL | * | HG002compoundhet | homalt | 33.4304 | 91.1079 | 20.4709 | 62.9558 | 625 | 61 | 626 | 2432 | 2127 | 87.4589 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 30.7692 | 61.9718 | 20.4651 | 43.1217 | 44 | 27 | 44 | 171 | 145 | 84.7953 | |
| anovak-vg | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 20.4545 | 88.0109 | 0 | 1 | 27 | 105 | 4 | 3.8095 | |
| anovak-vg | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 20.4545 | 88.0109 | 0 | 1 | 27 | 105 | 4 | 3.8095 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 27.4390 | 41.6667 | 20.4545 | 56.4356 | 10 | 14 | 9 | 35 | 7 | 20.0000 | |
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 19.2653 | 18.2294 | 20.4260 | 59.9344 | 383 | 1718 | 374 | 1457 | 1446 | 99.2450 | |
| gduggal-bwavard | INDEL | D16_PLUS | HG002compoundhet | * | 17.4062 | 15.1645 | 20.4258 | 36.2202 | 355 | 1986 | 355 | 1383 | 1372 | 99.2046 | |
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 32.5074 | 80.0000 | 20.3980 | 59.7194 | 40 | 10 | 41 | 160 | 156 | 97.5000 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 20.3390 | 94.8606 | 0 | 0 | 12 | 47 | 8 | 17.0213 | |
| jpowers-varprowl | INDEL | D16_PLUS | HG002compoundhet | het | 32.6811 | 83.4568 | 20.3190 | 35.8955 | 338 | 67 | 344 | 1349 | 1346 | 99.7776 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 5.7971 | 3.3816 | 20.2899 | 80.2292 | 14 | 400 | 14 | 55 | 47 | 85.4545 | |
| gduggal-bwavard | INDEL | D16_PLUS | HG002compoundhet | het | 32.7572 | 85.1852 | 20.2773 | 36.0547 | 345 | 60 | 351 | 1380 | 1369 | 99.2029 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 20.2658 | 93.8269 | 0 | 0 | 61 | 240 | 68 | 28.3333 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 0.0000 | 0.0000 | 20.2658 | 93.8269 | 0 | 0 | 61 | 240 | 68 | 28.3333 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 20.1117 | 86.6018 | 0 | 0 | 36 | 143 | 8 | 5.5944 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 19.2500 | 18.4685 | 20.1005 | 60.4374 | 41 | 181 | 40 | 159 | 151 | 94.9686 | |
| mlin-fermikit | INDEL | * | HG002compoundhet | homalt | 32.9688 | 92.1283 | 20.0767 | 74.2148 | 632 | 54 | 628 | 2500 | 2465 | 98.6000 | |
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 32.0359 | 80.0905 | 20.0224 | 83.6832 | 177 | 44 | 179 | 715 | 42 | 5.8741 | |
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 28.5714 | 50.0000 | 20.0000 | 72.2222 | 1 | 1 | 1 | 4 | 0 | 0.0000 | |
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 28.5714 | 50.0000 | 20.0000 | 93.5065 | 1 | 1 | 1 | 4 | 1 | 25.0000 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 28.5714 | 50.0000 | 20.0000 | 72.2222 | 1 | 1 | 1 | 4 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 33.3333 | 100.0000 | 20.0000 | 89.3617 | 1 | 0 | 1 | 4 | 3 | 75.0000 | |
| ciseli-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 0.0000 | 0.0000 | 20.0000 | 96.5753 | 0 | 0 | 1 | 4 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C1_5 | map_l125_m0_e0 | * | 0.0000 | 0.0000 | 20.0000 | 98.5030 | 0 | 0 | 1 | 4 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C1_5 | map_l125_m0_e0 | homalt | 0.0000 | 0.0000 | 20.0000 | 97.4093 | 0 | 0 | 1 | 4 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 0.0000 | 0.0000 | 20.0000 | 89.4366 | 0 | 0 | 3 | 12 | 1 | 8.3333 | |
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 25.0000 | 33.3333 | 20.0000 | 98.9024 | 9 | 18 | 9 | 36 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 2.1108 | 1.1142 | 20.0000 | 87.1795 | 4 | 355 | 2 | 8 | 1 | 12.5000 | |
| gduggal-snapvard | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 20.0000 | 90.7407 | 0 | 0 | 1 | 4 | 1 | 25.0000 | |
| gduggal-snapvard | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 20.0000 | 89.7959 | 0 | 0 | 1 | 4 | 1 | 25.0000 | |
| gduggal-snapvard | INDEL | C1_5 | map_l125_m0_e0 | het | 0.0000 | 0.0000 | 20.0000 | 96.0254 | 0 | 0 | 10 | 40 | 3 | 7.5000 | |
| gduggal-snapvard | INDEL | C1_5 | map_l250_m0_e0 | * | 0.0000 | 0.0000 | 20.0000 | 98.5229 | 0 | 0 | 2 | 8 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C1_5 | map_l250_m1_e0 | het | 0.0000 | 0.0000 | 20.0000 | 97.5938 | 0 | 0 | 5 | 20 | 1 | 5.0000 | |
| gduggal-snapvard | INDEL | C1_5 | map_l250_m2_e0 | het | 0.0000 | 0.0000 | 20.0000 | 97.8430 | 0 | 0 | 5 | 20 | 1 | 5.0000 | |