PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
53301-53350 / 86044 show all | |||||||||||||||
| ciseli-custom | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 30.7692 | 40.0000 | 25.0000 | 99.2747 | 2 | 3 | 2 | 6 | 3 | 50.0000 | |
| ciseli-custom | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 25.0000 | 97.3510 | 0 | 0 | 3 | 9 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 25.0000 | 95.2941 | 0 | 0 | 1 | 3 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 25.0000 | 97.8261 | 0 | 0 | 2 | 6 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 25.0000 | 96.6387 | 0 | 0 | 1 | 3 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 25.0000 | 94.1176 | 0 | 0 | 3 | 9 | 2 | 22.2222 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 25.0000 | 91.3669 | 0 | 0 | 3 | 9 | 2 | 22.2222 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 40.0000 | 100.0000 | 25.0000 | 95.4545 | 1 | 0 | 1 | 3 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 25.0000 | 96.1577 | 0 | 0 | 19 | 57 | 8 | 14.0351 | |
| ciseli-custom | INDEL | C6_15 | map_siren | * | 0.0000 | 0.0000 | 25.0000 | 98.2222 | 0 | 0 | 1 | 3 | 1 | 33.3333 | |
| ciseli-custom | INDEL | D6_15 | map_l250_m0_e0 | het | 25.0000 | 25.0000 | 25.0000 | 98.6486 | 1 | 3 | 1 | 3 | 0 | 0.0000 | |
| ciseli-custom | INDEL | I16_PLUS | map_l100_m1_e0 | * | 6.6667 | 3.8462 | 25.0000 | 96.4602 | 1 | 25 | 1 | 3 | 1 | 33.3333 | |
| ciseli-custom | INDEL | I16_PLUS | map_l100_m2_e0 | * | 6.6667 | 3.8462 | 25.0000 | 97.0149 | 1 | 25 | 1 | 3 | 1 | 33.3333 | |
| ciseli-custom | INDEL | I16_PLUS | map_l100_m2_e1 | * | 6.6667 | 3.8462 | 25.0000 | 97.1223 | 1 | 25 | 1 | 3 | 1 | 33.3333 | |
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 33.3333 | 50.0000 | 25.0000 | 73.3333 | 1 | 1 | 1 | 3 | 0 | 0.0000 | |
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 33.3333 | 50.0000 | 25.0000 | 89.1892 | 1 | 1 | 1 | 3 | 0 | 0.0000 | |
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 40.0000 | 100.0000 | 25.0000 | 50.0000 | 1 | 0 | 1 | 3 | 1 | 33.3333 | |
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 37.5000 | 75.0000 | 25.0000 | 86.6667 | 6 | 2 | 8 | 24 | 2 | 8.3333 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 33.3333 | 50.0000 | 25.0000 | 73.3333 | 1 | 1 | 1 | 3 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 0.0000 | 25.0000 | 42.8571 | 0 | 4 | 1 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 25.0000 | 69.2308 | 0 | 26 | 2 | 6 | 5 | 83.3333 | |
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 0.0000 | 25.0000 | 99.9765 | 0 | 0 | 1 | 3 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 0.0000 | 25.0000 | 99.9194 | 0 | 0 | 1 | 3 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l250_m0_e0 | * | 40.0000 | 100.0000 | 25.0000 | 96.8504 | 1 | 0 | 1 | 3 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 25.0000 | 77.7778 | 0 | 0 | 1 | 3 | 2 | 66.6667 | |
| gduggal-snapfb | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 25.0000 | 93.8462 | 0 | 0 | 1 | 3 | 2 | 66.6667 | |
| gduggal-snapfb | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 25.0000 | 93.5484 | 0 | 0 | 1 | 3 | 2 | 66.6667 | |
| gduggal-snapfb | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 25.0000 | 95.2941 | 0 | 0 | 1 | 3 | 2 | 66.6667 | |
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 25.0000 | 97.0149 | 0 | 0 | 2 | 6 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 25.0000 | 96.4602 | 0 | 0 | 1 | 3 | 1 | 33.3333 | |
| gduggal-bwavard | INDEL | C16_PLUS | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 25.0000 | 97.5904 | 0 | 0 | 1 | 3 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 25.0000 | 97.2789 | 0 | 0 | 1 | 3 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 25.0000 | 97.8836 | 0 | 0 | 1 | 3 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 25.0000 | 97.5460 | 0 | 0 | 1 | 3 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | map_siren | * | 0.0000 | 0.0000 | 25.0000 | 98.3193 | 0 | 0 | 1 | 3 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | map_siren | het | 0.0000 | 0.0000 | 25.0000 | 98.0769 | 0 | 0 | 1 | 3 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 25.0000 | 94.3128 | 0 | 0 | 3 | 9 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 0.0000 | 25.0000 | 94.1463 | 0 | 0 | 3 | 9 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 0.0000 | 0.0000 | 25.0000 | 94.7712 | 0 | 0 | 2 | 6 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 25.0000 | 25.0000 | 25.0000 | 99.0499 | 1 | 3 | 1 | 3 | 1 | 33.3333 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 40.0000 | 100.0000 | 25.0000 | 98.9822 | 1 | 0 | 1 | 3 | 1 | 33.3333 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 25.0000 | 25.0000 | 25.0000 | 99.0431 | 1 | 3 | 1 | 3 | 1 | 33.3333 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 40.0000 | 100.0000 | 25.0000 | 98.9744 | 1 | 0 | 1 | 3 | 1 | 33.3333 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l250_m0_e0 | * | 40.0000 | 100.0000 | 25.0000 | 96.8000 | 1 | 0 | 1 | 3 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l250_m0_e0 | het | 40.0000 | 100.0000 | 25.0000 | 96.3964 | 1 | 0 | 1 | 3 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 25.0000 | 93.5484 | 0 | 0 | 1 | 3 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 25.0000 | 85.9649 | 0 | 0 | 2 | 6 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 0.0000 | 0.0000 | 25.0000 | 96.0396 | 0 | 0 | 2 | 6 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 25.0000 | 96.4602 | 0 | 0 | 1 | 3 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 40.0000 | 100.0000 | 25.0000 | 92.0000 | 1 | 0 | 1 | 3 | 2 | 66.6667 | |