PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
53051-53100 / 86044 show all | |||||||||||||||
| hfeng-pmm2 | INDEL | D6_15 | HG002compoundhet | homalt | 47.5248 | 100.0000 | 31.1688 | 71.0526 | 24 | 0 | 24 | 53 | 52 | 98.1132 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 32.7668 | 34.5725 | 31.1404 | 85.7143 | 93 | 176 | 71 | 157 | 40 | 25.4777 | |
| jlack-gatk | INDEL | * | HG002compoundhet | homalt | 47.4306 | 99.5627 | 31.1304 | 79.5488 | 683 | 3 | 683 | 1511 | 1501 | 99.3382 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 26.8490 | 23.6502 | 31.0484 | 54.2013 | 311 | 1004 | 308 | 684 | 676 | 98.8304 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 45.1741 | 82.9268 | 31.0421 | 68.1047 | 136 | 28 | 140 | 311 | 310 | 99.6785 | |
| gduggal-snapvard | INDEL | C1_5 | map_l250_m1_e0 | * | 0.0000 | 0.0000 | 31.0345 | 97.5753 | 0 | 0 | 9 | 20 | 1 | 5.0000 | |
| gduggal-snapvard | INDEL | C1_5 | map_l250_m2_e0 | * | 0.0000 | 0.0000 | 31.0345 | 97.8097 | 0 | 0 | 9 | 20 | 1 | 5.0000 | |
| gduggal-snapvard | INDEL | C1_5 | map_l250_m2_e1 | * | 0.0000 | 0.0000 | 31.0345 | 97.8582 | 0 | 0 | 9 | 20 | 1 | 5.0000 | |
| mlin-fermikit | INDEL | D6_15 | HG002compoundhet | het | 44.7280 | 80.2570 | 31.0032 | 43.1484 | 687 | 169 | 683 | 1520 | 1507 | 99.1447 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 39.9604 | 56.2674 | 30.9816 | 39.7969 | 202 | 157 | 202 | 450 | 389 | 86.4444 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 42.2961 | 66.6667 | 30.9735 | 85.3532 | 34 | 17 | 70 | 156 | 39 | 25.0000 | |
| gduggal-snapplat | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 27.4935 | 24.7277 | 30.9558 | 84.2395 | 999 | 3041 | 1276 | 2846 | 368 | 12.9304 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 26.8074 | 23.6447 | 30.9468 | 56.6057 | 929 | 3000 | 925 | 2064 | 2051 | 99.3702 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 12.8457 | 8.1136 | 30.8219 | 63.7717 | 40 | 453 | 45 | 101 | 70 | 69.3069 | |
| gduggal-snapvard | INDEL | C6_15 | segdup | * | 0.0000 | 0.0000 | 30.7692 | 97.7113 | 0 | 0 | 4 | 9 | 3 | 33.3333 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 1.2251 | 0.6250 | 30.7692 | 75.3555 | 3 | 477 | 16 | 36 | 11 | 30.5556 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 3.5346 | 1.8750 | 30.7692 | 75.2381 | 3 | 157 | 16 | 36 | 11 | 30.5556 | |
| gduggal-bwavard | INDEL | C1_5 | map_l250_m1_e0 | * | 0.0000 | 0.0000 | 30.7692 | 98.0798 | 0 | 0 | 4 | 9 | 1 | 11.1111 | |
| gduggal-bwavard | INDEL | C1_5 | map_l250_m2_e0 | * | 0.0000 | 0.0000 | 30.7692 | 98.2736 | 0 | 0 | 4 | 9 | 1 | 11.1111 | |
| gduggal-bwavard | INDEL | C1_5 | map_l250_m2_e1 | * | 0.0000 | 0.0000 | 30.7692 | 98.3269 | 0 | 0 | 4 | 9 | 1 | 11.1111 | |
| astatham-gatk | INDEL | D16_PLUS | HG002compoundhet | homalt | 47.0588 | 100.0000 | 30.7692 | 73.1959 | 8 | 0 | 8 | 18 | 18 | 100.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l125_m0_e0 | * | 42.1053 | 66.6667 | 30.7692 | 92.3754 | 8 | 4 | 8 | 18 | 2 | 11.1111 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l150_m0_e0 | * | 40.0000 | 57.1429 | 30.7692 | 93.1937 | 4 | 3 | 4 | 9 | 2 | 22.2222 | |
| qzeng-custom | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 47.0588 | 100.0000 | 30.7692 | 98.0798 | 4 | 0 | 4 | 9 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 47.0588 | 100.0000 | 30.7692 | 98.1586 | 4 | 0 | 4 | 9 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 47.0588 | 100.0000 | 30.7692 | 98.1716 | 4 | 0 | 4 | 9 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | HG002compoundhet | homalt | 47.0588 | 100.0000 | 30.7692 | 74.2574 | 8 | 0 | 8 | 18 | 18 | 100.0000 | |
| mlin-fermikit | INDEL | * | HG002compoundhet | het | 43.9232 | 77.6258 | 30.6263 | 58.8856 | 3178 | 916 | 2983 | 6757 | 6682 | 98.8900 | |
| gduggal-bwavard | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 30.6122 | 94.1106 | 0 | 0 | 15 | 34 | 4 | 11.7647 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 30.5499 | 87.9361 | 0 | 0 | 150 | 341 | 58 | 17.0088 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 30.5499 | 87.9361 | 0 | 0 | 150 | 341 | 58 | 17.0088 | |
| gduggal-bwafb | INDEL | D1_5 | HG002compoundhet | homalt | 46.3350 | 95.8763 | 30.5495 | 82.2716 | 279 | 12 | 278 | 632 | 615 | 97.3101 | |
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 37.3402 | 48.0263 | 30.5439 | 97.0255 | 73 | 79 | 73 | 166 | 10 | 6.0241 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 46.2389 | 95.1945 | 30.5355 | 26.2146 | 416 | 21 | 422 | 960 | 895 | 93.2292 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 43.6411 | 76.8293 | 30.4762 | 68.5864 | 126 | 38 | 128 | 292 | 286 | 97.9452 | |
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 30.4348 | 95.4858 | 0 | 0 | 14 | 32 | 4 | 12.5000 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 4.7019 | 2.5478 | 30.4348 | 66.6667 | 4 | 153 | 7 | 16 | 14 | 87.5000 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 5.9197 | 3.2787 | 30.4348 | 64.6154 | 2 | 59 | 7 | 16 | 14 | 87.5000 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 30.4348 | 95.1983 | 0 | 0 | 7 | 16 | 4 | 25.0000 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 45.3799 | 89.3939 | 30.4082 | 52.3346 | 295 | 35 | 298 | 682 | 674 | 98.8270 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 33.6634 | 37.7778 | 30.3571 | 77.6000 | 17 | 28 | 17 | 39 | 34 | 87.1795 | |
| gduggal-snapfb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 46.2642 | 97.2779 | 30.3489 | 80.4847 | 2573 | 72 | 2627 | 6029 | 58 | 0.9620 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 30.2752 | 80.5357 | 0 | 0 | 33 | 76 | 13 | 17.1053 | |
| ciseli-custom | INDEL | C1_5 | HG002complexvar | homalt | 0.0000 | 0.0000 | 30.2740 | 87.3110 | 0 | 0 | 221 | 509 | 139 | 27.3084 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 30.2294 | 87.6521 | 0 | 0 | 224 | 517 | 58 | 11.2186 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 41.4960 | 66.6208 | 30.1322 | 55.6999 | 1451 | 727 | 1459 | 3383 | 3363 | 99.4088 | |
| gduggal-snapvard | INDEL | C1_5 | HG002compoundhet | * | 0.0000 | 0.0000 | 30.1095 | 80.7008 | 0 | 1 | 330 | 766 | 111 | 14.4909 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 45.9790 | 97.3958 | 30.0926 | 23.2227 | 187 | 5 | 195 | 453 | 421 | 92.9360 | |
| ckim-dragen | INDEL | * | HG002compoundhet | homalt | 46.1333 | 99.2711 | 30.0488 | 84.8211 | 681 | 5 | 677 | 1576 | 1573 | 99.8096 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 26.2279 | 23.2884 | 30.0166 | 55.4521 | 915 | 3014 | 905 | 2110 | 2058 | 97.5355 | |