PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
5251-5300 / 86044 show all
gduggal-bwaplatSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
95.3231
91.0641
100.0000
50.9552
1335131133500
gduggal-bwaplatSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
66.6667
10100
gduggal-bwaplatSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
93.4823
87.7622
100.0000
53.9683
75310575400
gduggal-bwaplatSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
66.6667
50.0000
100.0000
97.6744
11100
gduggal-bwaplatSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
95.6522
91.6667
100.0000
95.9854
1111100
gduggal-bwaplatSNPtilowcmp_SimpleRepeat_diTR_51to200*
60.8696
43.7500
100.0000
99.2299
79700
gduggal-bwaplatSNPtilowcmp_SimpleRepeat_diTR_51to200het
46.1538
30.0000
100.0000
99.5957
37300
gduggal-bwaplatSNPtilowcmp_SimpleRepeat_diTR_51to200homalt
80.0000
66.6667
100.0000
97.6048
42400
gduggal-bwaplatSNPtilowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
83.3333
20200
gduggal-bwaplatSNPtilowcmp_SimpleRepeat_quadTR_11to50hetalt
100.0000
100.0000
100.0000
66.6667
10100
gduggal-bwaplatSNPtilowcmp_SimpleRepeat_triTR_51to200*
54.5455
37.5000
100.0000
99.2228
35300
gduggal-bwaplatSNPtilowcmp_SimpleRepeat_triTR_51to200het
50.0000
33.3333
100.0000
99.3939
24200
gduggal-bwaplatSNPtilowcmp_SimpleRepeat_triTR_51to200homalt
66.6667
50.0000
100.0000
98.2143
11100
gduggal-bwaplatSNPtimap_l100_m0_e0hetalt
52.6316
35.7143
100.0000
93.4211
59500
gduggal-bwaplatSNPtimap_l100_m1_e0hetalt
71.1111
55.1724
100.0000
88.8889
16131600
gduggal-bwaplatSNPtimap_l100_m2_e0hetalt
72.3404
56.6667
100.0000
89.8204
17131700
gduggal-bwaplatSNPtimap_l100_m2_e1hetalt
73.4694
58.0645
100.0000
89.2857
18131800
gduggal-bwaplatSNPtimap_l125_m0_e0hetalt
22.2222
12.5000
100.0000
98.3871
17100
gduggal-bwaplatSNPtimap_l125_m1_e0hetalt
66.6667
50.0000
100.0000
89.1892
12121200
gduggal-bwaplatSNPtimap_l125_m2_e0hetalt
66.6667
50.0000
100.0000
91.3669
12121200
gduggal-bwaplatSNPtimap_l125_m2_e1hetalt
66.6667
50.0000
100.0000
91.3669
12121200
gduggal-bwaplatSNPtimap_l150_m0_e0hetalt
50.0000
33.3333
100.0000
98.1818
12100
gduggal-bwaplatSNPtimap_l150_m1_e0hetalt
63.6364
46.6667
100.0000
92.4731
78700
gduggal-bwaplatSNPtimap_l150_m2_e0hetalt
63.6364
46.6667
100.0000
93.7500
78700
gduggal-bwaplatSNPtimap_l150_m2_e1hetalt
63.6364
46.6667
100.0000
93.8053
78700
gduggal-bwaplatSNPtimap_l250_m0_e0homalt
45.6637
29.5872
100.0000
97.2939
12930712900
gduggal-bwaplatSNPtimap_l250_m1_e0homalt
47.5332
31.1761
100.0000
95.0135
501110650000
gduggal-bwaplatSNPtimap_l250_m2_e0homalt
49.2891
32.7044
100.0000
95.1810
572117757100
gduggal-bwaplatSNPtimap_l250_m2_e1homalt
49.1915
32.6185
100.0000
95.2072
578119457700
gduggal-bwaplatSNPtisegduphetalt
100.0000
100.0000
100.0000
99.1667
20200
gduggal-bwaplatSNPtitech_badpromotershomalt
94.8718
90.2439
100.0000
44.7761
3743700
gduggal-bwaplatSNPtvHG002compoundhethetalt
96.3319
92.9234
100.0000
22.7493
8016179800
gduggal-bwaplatSNPtvfunc_cdshetalt
94.7368
90.0000
100.0000
57.1429
91900
gduggal-bwaplatSNPtvfunc_cdshomalt
99.4394
98.8850
100.0000
27.0563
168519168500
gduggal-bwaplatSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
86.9565
76.9231
100.0000
84.3750
1031000
gduggal-bwaplatSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
92.8571
86.6667
100.0000
96.9838
1321300
gduggal-bwaplatSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
95.7746
91.8919
100.0000
57.9448
4423944200
gduggal-bwaplatSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
87.5000
10100
gduggal-bwaplatSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
89.5292
81.0433
100.0000
70.5882
63714964000
gduggal-bwaplatSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
83.3333
10100
gduggal-bwaplatSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
86.8534
76.7619
100.0000
76.0472
40312240600
gduggal-bwaplatSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
50.0000
33.3333
100.0000
98.6486
12100
gduggal-bwaplatSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
92.8571
86.6667
100.0000
96.9838
1321300
gduggal-bwaplatSNPtvlowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
77.2727
50500
gduggal-bwaplatSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
91.4701
84.2809
100.0000
64.5876
3276611327600
gduggal-bwaplatSNPtvlowcmp_SimpleRepeat_quadTR_11to50hetalt
88.8889
80.0000
100.0000
55.5556
41400
gduggal-bwaplatSNPtvlowcmp_SimpleRepeat_quadTR_51to200*
66.6667
50.0000
100.0000
96.5517
21212100
gduggal-bwaplatSNPtvlowcmp_SimpleRepeat_quadTR_51to200het
69.0909
52.7778
100.0000
96.2891
19171900
gduggal-bwaplatSNPtvlowcmp_SimpleRepeat_quadTR_51to200homalt
50.0000
33.3333
100.0000
97.9167
24200
gduggal-bwaplatSNPtvlowcmp_SimpleRepeat_triTR_51to200*
100.0000
100.0000
100.0000
99.1935
10100