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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
52751-52800 / 86044 show all
gduggal-bwavardINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200*
28.6792
24.6753
34.2342
68.3084
152464152292286
97.9452
ciseli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
48.6704
84.3829
34.1974
80.6855
670124686132025
1.8939
eyeh-varpipeINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
41.6309
53.2787
34.1623
32.5088
260228261503475
94.4334
gduggal-bwavardINDELC1_5map_l150_m2_e1het
0.0000
0.0000
34.1463
96.4004
0014273
11.1111
gduggal-bwavardINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
24.8564
19.5402
34.1463
81.7778
1770142716
59.2593
gduggal-bwavardINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
44.2791
62.9630
34.1463
81.0185
1710142716
59.2593
mlin-fermikitINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200het
48.0237
81.0651
34.1176
68.8073
1373258112111
99.1071
ciseli-customINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10het
47.6401
79.3548
34.0369
66.9573
123321292502
0.8000
ciseli-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
48.4716
84.3364
34.0089
80.1936
109320311412214143
6.4589
gduggal-snapplatINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
37.4948
41.7896
34.0005
84.4865
255035522650514458
1.1275
gduggal-snapvardINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
0.0000
0.0000
34.0000
87.9130
0010219839
19.6970
anovak-vgINDELI16_PLUSlowcmp_SimpleRepeat_diTR_11to50*
9.6515
5.6250
33.9623
61.7329
27453367034
48.5714
anovak-vgINDEL*lowcmp_SimpleRepeat_triTR_51to200*
26.7404
22.0721
33.9130
42.0655
4917378152131
86.1842
ciseli-customINDELI6_15lowcmp_SimpleRepeat_diTR_11to50homalt
42.4438
56.8627
33.8583
68.1704
876686168147
87.5000
anovak-vgINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
39.9479
48.7805
33.8235
55.5556
404269135108
80.0000
gduggal-snapvardINDEL*lowcmp_SimpleRepeat_diTR_51to200het
34.5477
35.3061
33.8212
42.2578
17331764712661039
82.0695
ciseli-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
48.1114
83.3977
33.8073
56.3749
21643214419397
94.7494
eyeh-varpipeINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200*
25.9640
21.0884
33.7719
34.7639
155580154302292
96.6887
gduggal-snapvardINDEL*lowcmp_SimpleRepeat_diTR_51to200*
23.1444
17.6107
33.7493
43.2911
370173164912741040
81.6327
anovak-vgINDELD1_5lowcmp_SimpleRepeat_triTR_51to200*
30.6011
28.0000
33.7349
46.7949
2154285549
89.0909
anovak-vgINDELD1_5lowcmp_SimpleRepeat_diTR_51to200*
17.5930
11.9082
33.6634
40.2367
83614102201155
77.1144
gduggal-bwavardINDEL*lowcmp_SimpleRepeat_quadTR_51to200*
31.9171
30.3578
33.6453
67.1740
806184979115601458
93.4615
gduggal-snapplatINDELD1_5lowcmp_SimpleRepeat_triTR_51to200*
32.0725
30.6667
33.6134
68.6842
2352407944
55.6962
gduggal-snapfbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
42.3423
57.3171
33.5714
78.0220
4735479326
27.9570
gduggal-snapplatINDELI1_5lowcmp_SimpleRepeat_triTR_11to50*
31.4068
29.5238
33.5463
77.9887
31074031562444
7.0513
eyeh-varpipeINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200homalt
50.1159
99.4924
33.4936
34.9322
1961209415385
92.7711
ciseli-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
40.7567
52.0900
33.4737
59.2973
162149159316303
95.8861
gduggal-snapplatINDEL*lowcmp_SimpleRepeat_diTR_51to200*
17.1893
11.5659
33.4554
78.2586
2431858274545283
51.9266
gduggal-bwavardINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
48.6441
89.1553
33.4464
63.7189
7819578915701544
98.3439
gduggal-bwavardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
47.4256
81.8182
33.3900
61.2010
1782396176935293376
95.6645
gduggal-bwavardINDELC16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
0.0000
0.0000
33.3333
95.2381
00122
100.0000
gduggal-bwavardINDELC16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_merged*
0.0000
0.0000
33.3333
95.6485
0017344
11.7647
gduggal-bwavardINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
0.0000
0.0000
33.3333
94.6903
00482
25.0000
gduggal-bwavardINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
0.0000
0.0000
33.3333
95.8042
00240
0.0000
gduggal-bwavardINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
0.0000
0.0000
33.3333
90.0000
00240
0.0000
gduggal-bwavardINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
0.0000
0.0000
33.3333
96.7593
007145
35.7143
gduggal-bwavardINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
0.0000
0.0000
33.3333
96.3855
00483
37.5000
gduggal-bwavardINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
0.0000
0.0000
33.3333
94.6903
00482
25.0000
gduggal-bwavardINDELC16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10het
0.0000
0.0000
33.3333
94.7368
00120
0.0000
gduggal-bwavardINDELC16_PLUSlowcmp_SimpleRepeat_quadTR_51to200het
0.0000
0.0000
33.3333
96.9072
00120
0.0000
gduggal-bwavardINDELC16_PLUSmap_l100_m0_e0*
0.0000
0.0000
33.3333
96.8421
00120
0.0000
gduggal-bwavardINDELC16_PLUSmap_l100_m0_e0het
0.0000
0.0000
33.3333
96.3415
00120
0.0000
gduggal-bwavardINDELC16_PLUSsegdup*
0.0000
0.0000
33.3333
98.7854
00120
0.0000
gduggal-bwavardINDELC1_5func_cds*
0.0000
0.0000
33.3333
91.8919
00120
0.0000
gduggal-bwavardINDELC1_5map_l125_m0_e0*
0.0000
0.0000
33.3333
96.2073
0010202
10.0000
gduggal-bwavardINDELC6_15HG002compoundhethomalt
0.0000
0.0000
33.3333
80.0000
00122
100.0000
gduggal-bwavardINDELC6_15lowcmp_SimpleRepeat_homopolymer_6to10*
0.0000
0.0000
33.3333
94.9721
00360
0.0000
gduggal-bwavardINDELC6_15map_l125_m1_e0*
0.0000
0.0000
33.3333
97.2222
00240
0.0000
gduggal-bwavardINDELC6_15map_l125_m2_e0*
0.0000
0.0000
33.3333
97.5207
00240
0.0000
gduggal-bwavardINDELC6_15map_l125_m2_e1*
0.0000
0.0000
33.3333
97.6000
00240
0.0000