PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
52651-52700 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 28.1855 | 22.9755 | 36.4514 | 63.8922 | 610 | 2045 | 982 | 1712 | 1115 | 65.1285 | |
| ciseli-custom | INDEL | D16_PLUS | HG002compoundhet | het | 17.8807 | 11.8519 | 36.3934 | 44.8463 | 48 | 357 | 111 | 194 | 186 | 95.8763 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 36.3924 | 88.4798 | 0 | 0 | 115 | 201 | 40 | 19.9005 | |
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 42.1053 | 50.0000 | 36.3636 | 98.1002 | 4 | 4 | 4 | 7 | 1 | 14.2857 | |
| hfeng-pmm1 | INDEL | D6_15 | HG002compoundhet | homalt | 53.3333 | 100.0000 | 36.3636 | 67.8049 | 24 | 0 | 24 | 42 | 42 | 100.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l100_m2_e0 | * | 7.9208 | 4.4444 | 36.3636 | 95.3586 | 4 | 86 | 4 | 7 | 2 | 28.5714 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l100_m2_e0 | het | 13.5593 | 8.3333 | 36.3636 | 95.1754 | 4 | 44 | 4 | 7 | 2 | 28.5714 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l100_m2_e1 | * | 7.4074 | 4.1237 | 36.3636 | 95.4545 | 4 | 93 | 4 | 7 | 2 | 28.5714 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l100_m2_e1 | het | 12.9032 | 7.8431 | 36.3636 | 95.2790 | 4 | 47 | 4 | 7 | 2 | 28.5714 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_siren | * | 9.6970 | 5.5944 | 36.3636 | 92.6174 | 8 | 135 | 8 | 14 | 6 | 42.8571 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 39.6972 | 43.7037 | 36.3636 | 62.9969 | 59 | 76 | 88 | 154 | 95 | 61.6883 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 18.1984 | 12.1359 | 36.3636 | 91.4286 | 25 | 181 | 24 | 42 | 24 | 57.1429 | |
| raldana-dualsentieon | INDEL | D16_PLUS | HG002compoundhet | homalt | 53.3333 | 100.0000 | 36.3636 | 74.1176 | 8 | 0 | 8 | 14 | 14 | 100.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l150_m0_e0 | het | 53.3333 | 100.0000 | 36.3636 | 94.5545 | 4 | 0 | 4 | 7 | 3 | 42.8571 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 53.3333 | 100.0000 | 36.3636 | 63.3333 | 4 | 0 | 4 | 7 | 7 | 100.0000 | |
| anovak-vg | INDEL | I16_PLUS | map_l100_m1_e0 | * | 21.6216 | 15.3846 | 36.3636 | 80.0000 | 4 | 22 | 4 | 7 | 6 | 85.7143 | |
| anovak-vg | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 15.2866 | 9.6774 | 36.3636 | 52.5862 | 18 | 168 | 20 | 35 | 30 | 85.7143 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 37.9373 | 39.6694 | 36.3501 | 63.2242 | 384 | 584 | 976 | 1709 | 1112 | 65.0673 | |
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 49.5193 | 78.0488 | 36.2637 | 92.4606 | 32 | 9 | 33 | 58 | 18 | 31.0345 | |
| qzeng-custom | INDEL | D16_PLUS | map_l125_m2_e1 | * | 51.5647 | 89.2857 | 36.2500 | 95.6873 | 25 | 3 | 29 | 51 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | * | HG002compoundhet | homalt | 53.1056 | 99.7085 | 36.1905 | 83.1205 | 684 | 2 | 684 | 1206 | 1203 | 99.7512 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 52.0287 | 92.5996 | 36.1780 | 66.6261 | 488 | 39 | 496 | 875 | 863 | 98.6286 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 20.7177 | 14.5161 | 36.1702 | 74.1758 | 27 | 159 | 17 | 30 | 17 | 56.6667 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 28.0124 | 22.8571 | 36.1702 | 73.8889 | 8 | 27 | 17 | 30 | 17 | 56.6667 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 36.1111 | 72.9323 | 0 | 66 | 13 | 23 | 11 | 47.8261 | |
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 24.1770 | 18.1983 | 36.0063 | 77.7972 | 1107 | 4976 | 1374 | 2442 | 776 | 31.7772 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 7.2000 | 4.0000 | 36.0000 | 51.9231 | 1 | 24 | 9 | 16 | 15 | 93.7500 | |
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 40.0802 | 45.2489 | 35.9712 | 97.0872 | 100 | 121 | 100 | 178 | 16 | 8.9888 | |
| ghariani-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 34.5163 | 33.2073 | 35.9327 | 70.3914 | 2020 | 4063 | 2009 | 3582 | 3513 | 98.0737 | |
| qzeng-custom | INDEL | D16_PLUS | map_l125_m2_e0 | * | 51.7369 | 92.5926 | 35.8974 | 95.7470 | 25 | 2 | 28 | 50 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 51.8519 | 93.3333 | 35.8974 | 93.7898 | 14 | 1 | 14 | 25 | 7 | 28.0000 | |
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 48.4043 | 74.2857 | 35.8974 | 92.5643 | 26 | 9 | 28 | 50 | 16 | 32.0000 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 27.2634 | 21.9826 | 35.8835 | 56.2500 | 530 | 1881 | 530 | 947 | 929 | 98.0993 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 51.3139 | 90.2439 | 35.8491 | 90.7906 | 37 | 4 | 38 | 68 | 7 | 10.2941 | |
| gduggal-snapfb | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 52.4956 | 98.0106 | 35.8482 | 76.1642 | 2956 | 60 | 3022 | 5408 | 61 | 1.1280 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 52.1766 | 96.2264 | 35.7920 | 50.1344 | 3723 | 146 | 3717 | 6668 | 6640 | 99.5801 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 51.0479 | 89.1961 | 35.7556 | 37.7138 | 1742 | 211 | 1732 | 3112 | 2889 | 92.8342 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 51.7650 | 93.7381 | 35.7550 | 67.8055 | 494 | 33 | 502 | 902 | 894 | 99.1131 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 49.3293 | 79.5367 | 35.7513 | 30.4087 | 206 | 53 | 207 | 372 | 357 | 95.9677 | |
| gduggal-bwavard | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 41.6667 | 50.0000 | 35.7143 | 97.5567 | 5 | 5 | 5 | 9 | 0 | 0.0000 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 4.7393 | 2.5381 | 35.7143 | 92.6316 | 5 | 192 | 5 | 9 | 7 | 77.7778 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 51.7241 | 93.7500 | 35.7143 | 94.3396 | 15 | 1 | 15 | 27 | 8 | 29.6296 | |
| gduggal-bwafb | INDEL | I1_5 | HG002compoundhet | homalt | 52.2901 | 97.8723 | 35.6751 | 79.4310 | 322 | 7 | 325 | 586 | 578 | 98.6348 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 50.0921 | 84.4720 | 35.6021 | 27.7883 | 136 | 25 | 136 | 246 | 246 | 100.0000 | |
| ckim-isaac | INDEL | D16_PLUS | HG002compoundhet | het | 48.4816 | 76.0494 | 35.5828 | 39.9632 | 308 | 97 | 116 | 210 | 182 | 86.6667 | |
| gduggal-snapvard | INDEL | C16_PLUS | HG002complexvar | * | 0.0000 | 0.0000 | 35.5556 | 72.5610 | 0 | 0 | 16 | 29 | 6 | 20.6897 | |
| gduggal-snapplat | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 22.3230 | 16.2712 | 35.5425 | 80.2066 | 432 | 2223 | 606 | 1099 | 407 | 37.0337 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 50.1118 | 85.0427 | 35.5215 | 51.6283 | 3781 | 665 | 3804 | 6905 | 6879 | 99.6235 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 48.8339 | 78.4314 | 35.4545 | 62.0035 | 80 | 22 | 78 | 142 | 137 | 96.4789 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 38.8523 | 42.9872 | 35.4430 | 84.3564 | 236 | 313 | 252 | 459 | 4 | 0.8715 | |