PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
52301-52350 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | I16_PLUS | map_l100_m2_e0 | het | 52.9672 | 72.2222 | 41.8182 | 80.8362 | 13 | 5 | 23 | 32 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l100_m2_e1 | het | 52.9672 | 72.2222 | 41.8182 | 81.0345 | 13 | 5 | 23 | 32 | 0 | 0.0000 | |
| anovak-vg | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 29.2224 | 22.4601 | 41.8109 | 44.2465 | 619 | 2137 | 628 | 874 | 744 | 85.1259 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 55.8462 | 84.1067 | 41.8008 | 48.8238 | 10531 | 1990 | 10594 | 14750 | 14683 | 99.5458 | |
| gduggal-bwavard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 41.7614 | 95.5004 | 0 | 1 | 147 | 205 | 16 | 7.8049 | |
| gduggal-bwavard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 41.7614 | 95.5004 | 0 | 1 | 147 | 205 | 16 | 7.8049 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 41.7303 | 90.1219 | 0 | 0 | 328 | 458 | 93 | 20.3057 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 55.8376 | 84.6154 | 41.6667 | 48.2759 | 11 | 2 | 25 | 35 | 28 | 80.0000 | |
| gduggal-snapvard | INDEL | I6_15 | map_l250_m2_e0 | * | 45.4545 | 50.0000 | 41.6667 | 93.4426 | 4 | 4 | 10 | 14 | 10 | 71.4286 | |
| gduggal-snapvard | INDEL | I6_15 | map_l250_m2_e0 | het | 54.7945 | 80.0000 | 41.6667 | 92.9412 | 4 | 1 | 10 | 14 | 10 | 71.4286 | |
| gduggal-snapvard | INDEL | I6_15 | map_l250_m2_e1 | * | 45.4545 | 50.0000 | 41.6667 | 93.7008 | 4 | 4 | 10 | 14 | 10 | 71.4286 | |
| gduggal-snapvard | INDEL | I6_15 | map_l250_m2_e1 | het | 54.7945 | 80.0000 | 41.6667 | 93.2203 | 4 | 1 | 10 | 14 | 10 | 71.4286 | |
| gduggal-bwavard | INDEL | I6_15 | map_l150_m0_e0 | * | 50.0000 | 62.5000 | 41.6667 | 94.5701 | 5 | 3 | 5 | 7 | 3 | 42.8571 | |
| ciseli-custom | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 51.2821 | 66.6667 | 41.6667 | 90.1639 | 10 | 5 | 10 | 14 | 11 | 78.5714 | |
| ciseli-custom | INDEL | D6_15 | map_l250_m2_e1 | het | 38.4615 | 35.7143 | 41.6667 | 98.0645 | 5 | 9 | 5 | 7 | 1 | 14.2857 | |
| ciseli-custom | INDEL | I1_5 | map_l250_m0_e0 | het | 37.0370 | 33.3333 | 41.6667 | 99.0603 | 5 | 10 | 5 | 7 | 4 | 57.1429 | |
| cchapple-custom | INDEL | C1_5 | map_l125_m0_e0 | het | 0.0000 | 0.0000 | 41.6667 | 96.1783 | 0 | 0 | 5 | 7 | 4 | 57.1429 | |
| ciseli-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 41.6667 | 96.1415 | 0 | 0 | 5 | 7 | 1 | 14.2857 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 24.1692 | 17.0213 | 41.6667 | 74.4681 | 8 | 39 | 5 | 7 | 7 | 100.0000 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 10.8696 | 6.2500 | 41.6667 | 53.8462 | 1 | 15 | 5 | 7 | 1 | 14.2857 | |
| anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 0.0000 | 0.0000 | 41.6667 | 69.2308 | 0 | 2 | 5 | 7 | 7 | 100.0000 | |
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 47.6190 | 55.5556 | 41.6667 | 96.1905 | 5 | 4 | 5 | 7 | 4 | 57.1429 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 18.2169 | 11.6667 | 41.5385 | 87.5836 | 56 | 424 | 54 | 76 | 61 | 80.2632 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 52.5500 | 71.5640 | 41.5188 | 24.1862 | 151 | 60 | 1170 | 1648 | 1641 | 99.5752 | |
| gduggal-snapvard | INDEL | I16_PLUS | * | het | 3.9257 | 2.0603 | 41.4818 | 51.0283 | 56 | 2662 | 1047 | 1477 | 850 | 57.5491 | |
| ghariani-varprowl | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 56.3707 | 87.9455 | 41.4787 | 65.8135 | 3553 | 487 | 3568 | 5034 | 4915 | 97.6361 | |
| gduggal-snapfb | INDEL | C1_5 | HG002complexvar | * | 55.8904 | 85.7143 | 41.4634 | 75.3012 | 6 | 1 | 17 | 24 | 6 | 25.0000 | |
| anovak-vg | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 47.6231 | 55.9322 | 41.4634 | 53.9326 | 33 | 26 | 34 | 48 | 35 | 72.9167 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 57.8169 | 95.5224 | 41.4538 | 69.3558 | 192 | 9 | 211 | 298 | 13 | 4.3624 | |
| ciseli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 39.2362 | 37.2842 | 41.4038 | 61.8887 | 2268 | 3815 | 2336 | 3306 | 2550 | 77.1325 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 47.5921 | 56.0000 | 41.3793 | 69.7917 | 14 | 11 | 12 | 17 | 1 | 5.8824 | |
| asubramanian-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 58.5366 | 100.0000 | 41.3793 | 83.7989 | 12 | 0 | 12 | 17 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 58.5366 | 100.0000 | 41.3793 | 83.7989 | 12 | 0 | 12 | 17 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 49.4845 | 61.5385 | 41.3793 | 93.1765 | 16 | 10 | 12 | 17 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | HG002compoundhet | het | 55.6184 | 84.9383 | 41.3462 | 47.6949 | 344 | 61 | 258 | 366 | 363 | 99.1803 | |
| gduggal-bwavard | INDEL | C1_5 | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 41.3043 | 96.3434 | 0 | 0 | 19 | 27 | 3 | 11.1111 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 35.0447 | 30.4403 | 41.2903 | 53.1797 | 1196 | 2733 | 1216 | 1729 | 1499 | 86.6975 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 35.0186 | 30.4348 | 41.2281 | 58.5455 | 49 | 112 | 47 | 67 | 58 | 86.5672 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 18.4211 | 11.8644 | 41.1765 | 77.0270 | 7 | 52 | 7 | 10 | 4 | 40.0000 | |
| gduggal-snapvard | INDEL | C1_5 | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 41.1765 | 95.4085 | 0 | 0 | 56 | 80 | 9 | 11.2500 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 41.1765 | 88.7014 | 0 | 0 | 91 | 130 | 35 | 26.9231 | |
| qzeng-custom | INDEL | C6_15 | HG002compoundhet | * | 0.0000 | 0.0000 | 41.1765 | 91.0526 | 0 | 0 | 7 | 10 | 1 | 10.0000 | |
| ciseli-custom | INDEL | I1_5 | map_l250_m0_e0 | * | 34.1463 | 29.1667 | 41.1765 | 98.8591 | 7 | 17 | 7 | 10 | 5 | 50.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | * | * | 10.7850 | 6.2058 | 41.1492 | 71.3717 | 421 | 6363 | 444 | 635 | 373 | 58.7402 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 56.2607 | 88.9328 | 41.1449 | 83.1108 | 1125 | 140 | 1150 | 1645 | 97 | 5.8967 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 53.0778 | 74.8120 | 41.1290 | 71.0280 | 199 | 67 | 204 | 292 | 37 | 12.6712 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 37.9377 | 35.2193 | 41.1108 | 54.0150 | 3903 | 7179 | 3901 | 5588 | 5544 | 99.2126 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 33.7984 | 28.7018 | 41.0959 | 58.9386 | 692 | 1719 | 690 | 989 | 957 | 96.7644 | |
| gduggal-snapvard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 55.2770 | 84.4907 | 41.0749 | 86.9620 | 1095 | 201 | 1070 | 1535 | 61 | 3.9739 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 35.3662 | 31.0680 | 41.0448 | 83.2080 | 64 | 142 | 55 | 79 | 42 | 53.1646 | |