PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
52251-52300 / 86044 show all | |||||||||||||||
| anovak-vg | INDEL | D16_PLUS | HG002compoundhet | * | 28.7549 | 21.7001 | 42.6065 | 32.2197 | 508 | 1833 | 510 | 687 | 477 | 69.4323 | |
| gduggal-bwavard | INDEL | C1_5 | map_l125_m2_e0 | het | 0.0000 | 0.0000 | 42.5926 | 96.1401 | 0 | 0 | 23 | 31 | 4 | 12.9032 | |
| gduggal-bwavard | INDEL | C1_5 | map_l125_m2_e1 | het | 0.0000 | 0.0000 | 42.5926 | 96.2185 | 0 | 0 | 23 | 31 | 4 | 12.9032 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 39.0121 | 35.9892 | 42.5893 | 55.2279 | 5321 | 9464 | 5316 | 7166 | 7112 | 99.2464 | |
| anovak-vg | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 44.0797 | 45.6816 | 42.5864 | 46.2713 | 439 | 522 | 764 | 1030 | 885 | 85.9223 | |
| gduggal-bwavard | INDEL | C1_5 | map_l150_m2_e1 | * | 0.0000 | 0.0000 | 42.5532 | 96.3509 | 0 | 0 | 20 | 27 | 3 | 11.1111 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 57.3405 | 87.8864 | 42.5514 | 59.2810 | 4919 | 678 | 4950 | 6683 | 6644 | 99.4164 | |
| qzeng-custom | INDEL | I6_15 | map_l100_m0_e0 | het | 47.1671 | 52.9412 | 42.5287 | 85.0772 | 9 | 8 | 37 | 50 | 1 | 2.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 58.1718 | 92.1182 | 42.5074 | 70.5677 | 561 | 48 | 573 | 775 | 722 | 93.1613 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 53.6696 | 72.8723 | 42.4765 | 23.3535 | 137 | 51 | 1132 | 1533 | 1532 | 99.9348 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 26.8403 | 19.6198 | 42.4704 | 32.3024 | 258 | 1057 | 251 | 340 | 290 | 85.2941 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 35.5751 | 30.6061 | 42.4704 | 32.1470 | 101 | 229 | 251 | 340 | 290 | 85.2941 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 18.4985 | 11.8280 | 42.4242 | 51.4706 | 22 | 164 | 70 | 95 | 84 | 88.4211 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 54.3940 | 75.8621 | 42.3963 | 99.8352 | 66 | 21 | 92 | 125 | 2 | 1.6000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 55.8170 | 81.7294 | 42.3803 | 38.8099 | 586 | 131 | 584 | 794 | 776 | 97.7330 | |
| ciseli-custom | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 52.3810 | 68.7500 | 42.3077 | 90.1515 | 11 | 5 | 11 | 15 | 12 | 80.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 45.4362 | 49.0690 | 42.3041 | 95.5909 | 448 | 465 | 459 | 626 | 33 | 5.2716 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 56.9927 | 87.3563 | 42.2925 | 67.1172 | 532 | 77 | 535 | 730 | 725 | 99.3151 | |
| anovak-vg | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 48.6351 | 57.2200 | 42.2902 | 47.0270 | 424 | 317 | 746 | 1018 | 780 | 76.6208 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 52.7646 | 70.1389 | 42.2890 | 66.9445 | 202 | 86 | 436 | 595 | 310 | 52.1008 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 38.9035 | 36.0279 | 42.2780 | 67.7158 | 361 | 641 | 438 | 598 | 312 | 52.1739 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 58.7698 | 96.5789 | 42.2354 | 60.5712 | 5646 | 200 | 5638 | 7711 | 7534 | 97.7046 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 58.7698 | 96.5789 | 42.2354 | 60.5712 | 5646 | 200 | 5638 | 7711 | 7534 | 97.7046 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 39.4885 | 37.0800 | 42.2316 | 61.7642 | 894 | 1517 | 897 | 1227 | 722 | 58.8427 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 54.8356 | 78.1955 | 42.2222 | 77.3642 | 104 | 29 | 95 | 130 | 109 | 83.8462 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 58.1718 | 93.5484 | 42.2096 | 64.5582 | 58 | 4 | 149 | 204 | 8 | 3.9216 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 38.7872 | 35.8879 | 42.1961 | 62.4776 | 1152 | 2058 | 1149 | 1574 | 1547 | 98.2846 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 35.1776 | 30.1901 | 42.1390 | 49.2400 | 397 | 918 | 394 | 541 | 481 | 88.9094 | |
| gduggal-snapplat | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 29.4305 | 22.6149 | 42.1263 | 81.2487 | 2278 | 7795 | 2734 | 3756 | 1082 | 28.8072 | |
| jli-custom | INDEL | D16_PLUS | HG002compoundhet | homalt | 59.2593 | 100.0000 | 42.1053 | 67.7966 | 8 | 0 | 8 | 11 | 11 | 100.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l125_m0_e0 | het | 57.1429 | 88.8889 | 42.1053 | 92.5490 | 8 | 1 | 8 | 11 | 4 | 36.3636 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 28.6738 | 21.7391 | 42.1053 | 61.2245 | 5 | 18 | 8 | 11 | 10 | 90.9091 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 56.2300 | 84.6154 | 42.1053 | 63.3609 | 143 | 26 | 56 | 77 | 75 | 97.4026 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 57.8720 | 92.5676 | 42.0945 | 50.6085 | 137 | 11 | 205 | 282 | 275 | 97.5177 | |
| gduggal-snapvard | INDEL | I16_PLUS | * | * | 2.3476 | 1.2075 | 42.0851 | 50.8200 | 77 | 6300 | 1098 | 1511 | 872 | 57.7101 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 15.5475 | 9.5361 | 42.0635 | 45.6897 | 37 | 351 | 53 | 73 | 43 | 58.9041 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 33.7398 | 28.1768 | 42.0398 | 49.5609 | 102 | 260 | 169 | 233 | 185 | 79.3991 | |
| jpowers-varprowl | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 38.7027 | 35.8682 | 42.0236 | 64.3849 | 3613 | 6460 | 3601 | 4968 | 4896 | 98.5507 | |
| egarrison-hhga | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 56.0000 | 84.0000 | 42.0000 | 67.7419 | 42 | 8 | 42 | 58 | 51 | 87.9310 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 58.4037 | 95.8604 | 41.9946 | 60.0631 | 5604 | 242 | 5634 | 7782 | 7720 | 99.2033 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 58.4037 | 95.8604 | 41.9946 | 60.0631 | 5604 | 242 | 5634 | 7782 | 7720 | 99.2033 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 38.9448 | 36.3079 | 41.9946 | 48.7568 | 3434 | 6024 | 3436 | 4746 | 4690 | 98.8201 | |
| anovak-vg | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 23.2825 | 16.1074 | 41.9847 | 51.3011 | 24 | 125 | 55 | 76 | 63 | 82.8947 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 50.5670 | 63.6364 | 41.9512 | 31.6667 | 14 | 8 | 86 | 119 | 118 | 99.1597 | |
| qzeng-custom | INDEL | D16_PLUS | map_l125_m0_e0 | * | 59.0909 | 100.0000 | 41.9355 | 97.7714 | 12 | 0 | 13 | 18 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 41.9048 | 96.6074 | 0 | 0 | 44 | 61 | 16 | 26.2295 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 41.9048 | 96.6074 | 0 | 0 | 44 | 61 | 16 | 26.2295 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 23.8291 | 16.6493 | 41.8960 | 68.3446 | 160 | 801 | 137 | 190 | 58 | 30.5263 | |
| rpoplin-dv42 | INDEL | I6_15 | HG002compoundhet | het | 54.9434 | 79.8077 | 41.8919 | 76.8894 | 166 | 42 | 155 | 215 | 211 | 98.1395 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 54.5815 | 78.4416 | 41.8514 | 67.3617 | 302 | 83 | 321 | 446 | 114 | 25.5605 | |