PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
51851-51900 / 86044 show all | |||||||||||||||
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 28.7100 | 20.4082 | 48.3974 | 46.2069 | 150 | 585 | 151 | 161 | 125 | 77.6398 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 51.6769 | 55.4825 | 48.3599 | 47.7729 | 506 | 406 | 516 | 551 | 538 | 97.6407 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 33.7717 | 25.9481 | 48.3495 | 68.3855 | 260 | 742 | 249 | 266 | 179 | 67.2932 | |
| anovak-vg | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 39.8320 | 33.8727 | 48.3358 | 55.3849 | 3412 | 6661 | 4197 | 4486 | 3438 | 76.6384 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 44.4394 | 41.1352 | 48.3208 | 59.7393 | 7269 | 10402 | 7223 | 7725 | 7546 | 97.6828 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 44.4394 | 41.1352 | 48.3208 | 59.7393 | 7269 | 10402 | 7223 | 7725 | 7546 | 97.6828 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 44.0104 | 40.4063 | 48.3203 | 59.8954 | 6484 | 9563 | 6487 | 6938 | 6879 | 99.1496 | |
| ndellapenna-hhga | INDEL | D6_15 | HG002compoundhet | het | 61.6175 | 85.1636 | 48.2714 | 46.2388 | 729 | 127 | 1480 | 1586 | 1544 | 97.3518 | |
| eyeh-varpipe | INDEL | D6_15 | HG002compoundhet | het | 60.1947 | 80.0234 | 48.2412 | 75.0000 | 685 | 171 | 96 | 103 | 100 | 97.0874 | |
| gduggal-snapvard | INDEL | C1_5 | map_l100_m2_e1 | * | 0.0000 | 0.0000 | 48.1928 | 95.6316 | 0 | 0 | 80 | 86 | 9 | 10.4651 | |
| anovak-vg | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 60.8555 | 82.6087 | 48.1707 | 53.0086 | 76 | 16 | 79 | 85 | 74 | 87.0588 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 48.1481 | 89.9415 | 0 | 0 | 91 | 98 | 29 | 29.5918 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 63.1837 | 91.9278 | 48.1333 | 41.9722 | 3462 | 304 | 3481 | 3751 | 3650 | 97.3074 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 63.1837 | 91.9278 | 48.1333 | 41.9722 | 3462 | 304 | 3481 | 3751 | 3650 | 97.3074 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 58.2480 | 73.8182 | 48.1020 | 32.1234 | 609 | 216 | 1736 | 1873 | 1859 | 99.2525 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 58.2480 | 73.8182 | 48.1020 | 32.1234 | 609 | 216 | 1736 | 1873 | 1859 | 99.2525 | |
| ciseli-custom | INDEL | D6_15 | map_l100_m2_e1 | homalt | 58.9323 | 76.1194 | 48.0769 | 85.1216 | 51 | 16 | 50 | 54 | 51 | 94.4444 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 42.1139 | 37.4782 | 48.0583 | 42.5126 | 7719 | 12877 | 7710 | 8333 | 8271 | 99.2560 | |
| anovak-vg | INDEL | I16_PLUS | * | * | 32.9342 | 25.0588 | 48.0286 | 39.2493 | 1598 | 4779 | 1547 | 1674 | 1112 | 66.4277 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 37.3529 | 30.5677 | 48.0100 | 79.3529 | 210 | 477 | 193 | 209 | 153 | 73.2057 | |
| ciseli-custom | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 63.5187 | 93.8508 | 48.0041 | 71.9172 | 931 | 61 | 938 | 1016 | 8 | 0.7874 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 10.5305 | 5.9140 | 48.0000 | 69.1358 | 11 | 175 | 12 | 13 | 2 | 15.3846 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 60.5053 | 81.8731 | 47.9826 | 72.9778 | 542 | 120 | 880 | 954 | 458 | 48.0084 | |
| gduggal-snapvard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 62.1311 | 88.2872 | 47.9310 | 90.8828 | 701 | 93 | 695 | 755 | 39 | 5.1656 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 63.5123 | 94.3255 | 47.8735 | 39.2649 | 6300 | 379 | 6281 | 6839 | 6729 | 98.3916 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l100_m2_e0 | het | 61.8474 | 87.5000 | 47.8261 | 93.3765 | 42 | 6 | 44 | 48 | 20 | 41.6667 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 29.8913 | 21.7391 | 47.8261 | 39.4737 | 10 | 36 | 11 | 12 | 9 | 75.0000 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 29.0805 | 20.8955 | 47.8070 | 73.7629 | 112 | 424 | 109 | 119 | 119 | 100.0000 | |
| gduggal-snapfb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 64.4853 | 99.1348 | 47.7839 | 65.3135 | 1375 | 12 | 1380 | 1508 | 7 | 0.4642 | |
| anovak-vg | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 37.6387 | 31.0491 | 47.7790 | 58.0455 | 367 | 815 | 441 | 482 | 356 | 73.8589 | |
| anovak-vg | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 55.0866 | 65.0355 | 47.7778 | 51.5804 | 917 | 493 | 1376 | 1504 | 1123 | 74.6676 | |
| gduggal-snapvard | INDEL | I1_5 | HG002compoundhet | het | 60.6574 | 83.0588 | 47.7728 | 63.6646 | 706 | 144 | 5148 | 5628 | 4753 | 84.4527 | |
| anovak-vg | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 58.3587 | 75.0000 | 47.7612 | 82.0856 | 27 | 9 | 32 | 35 | 10 | 28.5714 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 59.2765 | 78.1250 | 47.7551 | 84.1321 | 125 | 35 | 117 | 128 | 89 | 69.5312 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 64.2536 | 98.2249 | 47.7419 | 79.1667 | 166 | 3 | 74 | 81 | 79 | 97.5309 | |
| mlin-fermikit | INDEL | D1_5 | HG002compoundhet | het | 59.9144 | 80.4398 | 47.7343 | 63.4097 | 1390 | 338 | 1380 | 1511 | 1467 | 97.0880 | |
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 54.8008 | 64.3595 | 47.7143 | 68.5676 | 623 | 345 | 668 | 732 | 276 | 37.7049 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 62.8906 | 92.3251 | 47.6872 | 81.6922 | 2442 | 203 | 2464 | 2703 | 33 | 1.2209 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 27.6134 | 19.4444 | 47.6190 | 91.1579 | 21 | 87 | 20 | 22 | 11 | 50.0000 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 49.1803 | 50.8475 | 47.6190 | 48.7805 | 30 | 29 | 30 | 33 | 26 | 78.7879 | |
| anovak-vg | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 27.3141 | 19.1489 | 47.6190 | 61.1111 | 9 | 38 | 10 | 11 | 10 | 90.9091 | |
| gduggal-bwavard | INDEL | I6_15 | map_l125_m0_e0 | * | 55.5556 | 66.6667 | 47.6190 | 92.3913 | 10 | 5 | 10 | 11 | 4 | 36.3636 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 11.8946 | 6.7961 | 47.6190 | 65.8537 | 14 | 192 | 20 | 22 | 20 | 90.9091 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 61.9377 | 88.6347 | 47.6003 | 71.2150 | 1201 | 154 | 1210 | 1332 | 1313 | 98.5736 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 21.2269 | 13.6601 | 47.5862 | 87.4784 | 209 | 1321 | 207 | 228 | 185 | 81.1404 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 21.2269 | 13.6601 | 47.5862 | 87.4784 | 209 | 1321 | 207 | 228 | 185 | 81.1404 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 62.4499 | 90.8511 | 47.5768 | 61.6650 | 1281 | 129 | 1286 | 1417 | 1364 | 96.2597 | |
| anovak-vg | INDEL | I6_15 | segdup | homalt | 59.8909 | 80.8511 | 47.5610 | 87.6506 | 38 | 9 | 39 | 43 | 42 | 97.6744 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 62.4926 | 91.1184 | 47.5533 | 63.3312 | 831 | 81 | 826 | 911 | 847 | 92.9748 | |
| ciseli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 60.9265 | 84.9007 | 47.5105 | 54.7800 | 9750 | 1734 | 9733 | 10753 | 9871 | 91.7976 | |