PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
51451-51500 / 86044 show all | |||||||||||||||
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 11.1111 | 6.2500 | 50.0000 | 90.4762 | 1 | 15 | 1 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | I1_5 | tech_badpromoters | * | 52.1739 | 54.5455 | 50.0000 | 52.0000 | 12 | 10 | 12 | 12 | 9 | 75.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l100_m0_e0 | homalt | 14.2857 | 8.3333 | 50.0000 | 95.1220 | 1 | 11 | 1 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l125_m0_e0 | homalt | 25.0000 | 16.6667 | 50.0000 | 93.1034 | 1 | 5 | 1 | 1 | 0 | 0.0000 | |
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 66.6667 | 100.0000 | 50.0000 | 86.6667 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 61.5385 | 80.0000 | 50.0000 | 50.0000 | 4 | 1 | 4 | 4 | 1 | 25.0000 | |
| ciseli-custom | SNP | * | map_l250_m1_e0 | hetalt | 50.0000 | 50.0000 | 50.0000 | 90.4762 | 2 | 2 | 2 | 2 | 2 | 100.0000 | |
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 66.6667 | 100.0000 | 50.0000 | 77.7778 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 50.0000 | 96.2264 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 50.0000 | 94.7368 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 50.0000 | 97.0149 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 0.0000 | 50.0000 | 98.4733 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 50.0000 | 97.2973 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C16_PLUS | segdup | * | 0.0000 | 0.0000 | 50.0000 | 97.7778 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C16_PLUS | segdup | homalt | 0.0000 | 0.0000 | 50.0000 | 97.2222 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 50.0000 | 97.2222 | 0 | 0 | 3 | 3 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 50.0000 | 96.5116 | 0 | 0 | 3 | 3 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 0.0000 | 50.0000 | 97.8495 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C1_5 | map_l150_m0_e0 | * | 0.0000 | 0.0000 | 50.0000 | 99.2701 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C1_5 | map_l150_m0_e0 | homalt | 0.0000 | 0.0000 | 50.0000 | 98.7013 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 50.0000 | 94.6237 | 0 | 0 | 5 | 5 | 2 | 40.0000 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 50.0000 | 93.3775 | 0 | 0 | 5 | 5 | 2 | 40.0000 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 50.0000 | 98.2143 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 66.6667 | 100.0000 | 50.0000 | 99.1701 | 1 | 0 | 2 | 2 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 50.0000 | 98.2456 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 50.0000 | 95.9596 | 0 | 0 | 2 | 2 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 0.0000 | 0.0000 | 50.0000 | 95.6522 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 50.0000 | 50.0000 | 50.0000 | 99.1111 | 1 | 1 | 1 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 50.0000 | 50.0000 | 50.0000 | 99.1071 | 1 | 1 | 1 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D6_15 | decoy | * | 66.6667 | 100.0000 | 50.0000 | 99.9108 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l250_m1_e0 | * | 66.6667 | 100.0000 | 50.0000 | 99.3333 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l250_m1_e0 | het | 66.6667 | 100.0000 | 50.0000 | 98.7805 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l250_m2_e0 | * | 66.6667 | 100.0000 | 50.0000 | 99.3827 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l250_m2_e0 | het | 66.6667 | 100.0000 | 50.0000 | 98.8764 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l250_m2_e1 | * | 66.6667 | 100.0000 | 50.0000 | 99.4012 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l250_m2_e1 | het | 66.6667 | 100.0000 | 50.0000 | 98.9130 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 66.6667 | 100.0000 | 50.0000 | 98.4000 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| ciseli-custom | SNP | ti | map_l150_m0_e0 | hetalt | 40.0000 | 33.3333 | 50.0000 | 90.4762 | 1 | 2 | 1 | 1 | 1 | 100.0000 | |
| ciseli-custom | SNP | ti | map_l250_m1_e0 | hetalt | 50.0000 | 50.0000 | 50.0000 | 82.6087 | 2 | 2 | 2 | 2 | 2 | 100.0000 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 66.6667 | 100.0000 | 50.0000 | 86.6667 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 61.5385 | 80.0000 | 50.0000 | 50.0000 | 4 | 1 | 4 | 4 | 1 | 25.0000 | |
| ciseli-custom | SNP | tv | map_l250_m1_e0 | hetalt | 50.0000 | 50.0000 | 50.0000 | 90.4762 | 2 | 2 | 2 | 2 | 2 | 100.0000 | |
| ckim-dragen | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 66.6667 | 100.0000 | 50.0000 | 60.0000 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 0.0000 | 50.0000 | 60.0000 | 0 | 0 | 1 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 50.0000 | 85.7143 | 0 | 1 | 1 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 0.0000 | 50.0000 | 85.7143 | 0 | 0 | 1 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 50.0000 | 88.2353 | 0 | 0 | 1 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 50.0000 | 88.2353 | 0 | 0 | 1 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 50.0000 | 86.6667 | 0 | 0 | 1 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 50.0000 | 86.6667 | 0 | 0 | 1 | 1 | 1 | 100.0000 | |