PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
51401-51450 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | I16_PLUS | map_l125_m0_e0 | het | 40.0000 | 33.3333 | 50.0000 | 91.3043 | 1 | 2 | 1 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l125_m0_e0 | homalt | 50.0000 | 50.0000 | 50.0000 | 87.5000 | 1 | 1 | 1 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l125_m1_e0 | homalt | 57.1429 | 66.6667 | 50.0000 | 89.1892 | 2 | 1 | 2 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l125_m2_e0 | homalt | 57.1429 | 66.6667 | 50.0000 | 92.5926 | 2 | 1 | 2 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l125_m2_e1 | homalt | 57.1429 | 66.6667 | 50.0000 | 92.7273 | 2 | 1 | 2 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l150_m0_e0 | * | 50.0000 | 50.0000 | 50.0000 | 84.0000 | 2 | 2 | 2 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l150_m0_e0 | het | 50.0000 | 50.0000 | 50.0000 | 85.7143 | 1 | 1 | 1 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l150_m0_e0 | homalt | 66.6667 | 100.0000 | 50.0000 | 81.8182 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l250_m1_e0 | * | 66.6667 | 100.0000 | 50.0000 | 90.4762 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l250_m2_e0 | * | 66.6667 | 100.0000 | 50.0000 | 92.3077 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l250_m2_e1 | * | 66.6667 | 100.0000 | 50.0000 | 92.5926 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 39.0244 | 32.0000 | 50.0000 | 68.0000 | 8 | 17 | 8 | 8 | 7 | 87.5000 | |
| mlin-fermikit | INDEL | I6_15 | map_l150_m0_e0 | * | 33.3333 | 25.0000 | 50.0000 | 93.6508 | 2 | 6 | 2 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l150_m0_e0 | het | 33.3333 | 25.0000 | 50.0000 | 93.5484 | 1 | 3 | 1 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l150_m0_e0 | homalt | 33.3333 | 25.0000 | 50.0000 | 93.1034 | 1 | 3 | 1 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l250_m1_e0 | homalt | 40.0000 | 33.3333 | 50.0000 | 94.2857 | 1 | 2 | 1 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l250_m2_e0 | homalt | 40.0000 | 33.3333 | 50.0000 | 94.8718 | 1 | 2 | 1 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l250_m2_e1 | homalt | 40.0000 | 33.3333 | 50.0000 | 95.2381 | 1 | 2 | 1 | 1 | 1 | 100.0000 | |
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 59.4595 | 73.3333 | 50.0000 | 96.4630 | 11 | 4 | 11 | 11 | 7 | 63.6364 | |
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | * | 66.6667 | 100.0000 | 50.0000 | 97.6190 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | het | 66.6667 | 100.0000 | 50.0000 | 96.2264 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 33.3333 | 25.0000 | 50.0000 | 98.5075 | 1 | 3 | 1 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 98.1132 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 33.3333 | 25.0000 | 50.0000 | 98.4000 | 1 | 3 | 1 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 97.9592 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l125_m2_e1 | hetalt | 50.0000 | 50.0000 | 50.0000 | 89.4737 | 2 | 2 | 1 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 50.0000 | 50.0000 | 50.0000 | 91.3043 | 1 | 1 | 1 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 88.2353 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 64.7059 | 91.6667 | 50.0000 | 51.7241 | 22 | 2 | 28 | 28 | 28 | 100.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l100_m0_e0 | homalt | 50.0000 | 50.0000 | 50.0000 | 89.4737 | 1 | 1 | 1 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l250_m1_e0 | * | 66.6667 | 100.0000 | 50.0000 | 95.5556 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l250_m1_e0 | het | 66.6667 | 100.0000 | 50.0000 | 93.5484 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l250_m2_e0 | * | 66.6667 | 100.0000 | 50.0000 | 96.0784 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l250_m2_e0 | het | 66.6667 | 100.0000 | 50.0000 | 94.2857 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l250_m2_e1 | * | 66.6667 | 100.0000 | 50.0000 | 96.1538 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l250_m2_e1 | het | 66.6667 | 100.0000 | 50.0000 | 94.4444 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_l250_m2_e0 | het | 66.6667 | 100.0000 | 50.0000 | 88.8889 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_l250_m2_e1 | * | 66.6667 | 100.0000 | 50.0000 | 93.5484 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_l250_m2_e1 | het | 66.6667 | 100.0000 | 50.0000 | 89.4737 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l150_m0_e0 | het | 50.0000 | 50.0000 | 50.0000 | 95.8763 | 2 | 2 | 2 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l250_m1_e0 | het | 50.0000 | 50.0000 | 50.0000 | 96.3303 | 2 | 2 | 2 | 2 | 2 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l250_m1_e0 | * | 33.3333 | 25.0000 | 50.0000 | 98.3740 | 1 | 3 | 1 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l250_m2_e0 | homalt | 66.6667 | 100.0000 | 50.0000 | 96.7213 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l250_m2_e1 | homalt | 66.6667 | 100.0000 | 50.0000 | 96.7742 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 66.6667 | 100.0000 | 50.0000 | 99.2218 | 2 | 0 | 2 | 2 | 1 | 50.0000 | |
| ciseli-custom | INDEL | D1_5 | tech_badpromoters | het | 60.0000 | 75.0000 | 50.0000 | 33.3333 | 6 | 2 | 6 | 6 | 2 | 33.3333 | |
| ciseli-custom | INDEL | D6_15 | map_l125_m1_e0 | homalt | 61.3636 | 79.4118 | 50.0000 | 87.9908 | 27 | 7 | 26 | 26 | 24 | 92.3077 | |
| ciseli-custom | INDEL | D6_15 | map_l250_m0_e0 | * | 50.0000 | 50.0000 | 50.0000 | 98.5258 | 3 | 3 | 3 | 3 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D6_15 | map_l250_m1_e0 | het | 47.6190 | 45.4545 | 50.0000 | 98.1273 | 5 | 6 | 5 | 5 | 0 | 0.0000 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 50.0000 | 50.0000 | 50.0000 | 74.6032 | 8 | 8 | 8 | 8 | 8 | 100.0000 | |