PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
51201-51250 / 86044 show all | |||||||||||||||
| ghariani-varprowl | INDEL | I6_15 | map_l250_m1_e0 | * | 46.1538 | 42.8571 | 50.0000 | 97.7358 | 3 | 4 | 3 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I6_15 | map_l250_m2_e0 | het | 54.5455 | 60.0000 | 50.0000 | 97.7941 | 3 | 2 | 3 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I6_15 | map_l250_m2_e1 | het | 54.5455 | 60.0000 | 50.0000 | 97.8873 | 3 | 2 | 3 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 66.6667 | 100.0000 | 50.0000 | 95.0000 | 2 | 0 | 2 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 9.2308 | 5.0847 | 50.0000 | 85.3659 | 3 | 56 | 3 | 3 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l100_m1_e0 | * | 17.3913 | 10.5263 | 50.0000 | 94.3445 | 12 | 102 | 11 | 11 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l100_m2_e0 | * | 17.1429 | 10.3448 | 50.0000 | 94.9192 | 12 | 104 | 11 | 11 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l100_m2_e1 | * | 17.1429 | 10.3448 | 50.0000 | 95.0339 | 12 | 104 | 11 | 11 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l125_m1_e0 | homalt | 11.7647 | 6.6667 | 50.0000 | 97.2222 | 1 | 14 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l125_m2_e0 | homalt | 11.7647 | 6.6667 | 50.0000 | 97.4026 | 1 | 14 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l125_m2_e1 | homalt | 11.7647 | 6.6667 | 50.0000 | 97.5309 | 1 | 14 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | tech_badpromoters | het | 36.3636 | 28.5714 | 50.0000 | 63.6364 | 2 | 5 | 2 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 66.6667 | 100.0000 | 50.0000 | 83.3333 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 66.6667 | 100.0000 | 50.0000 | 60.0000 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 40.0000 | 33.3333 | 50.0000 | 98.1982 | 1 | 2 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 66.6667 | 100.0000 | 50.0000 | 71.4286 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 66.6667 | 100.0000 | 50.0000 | 0.0000 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 50.0000 | 50.0000 | 50.0000 | 97.1831 | 1 | 1 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 66.6667 | 100.0000 | 50.0000 | 83.3333 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 66.6667 | 100.0000 | 50.0000 | 60.0000 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 40.0000 | 33.3333 | 50.0000 | 98.1982 | 1 | 2 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 16.0000 | 9.5238 | 50.0000 | 99.9920 | 2 | 19 | 1 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 50.0000 | 93.3333 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 50.0000 | 92.8571 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C16_PLUS | segdup | * | 0.0000 | 0.0000 | 50.0000 | 93.7500 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C16_PLUS | segdup | het | 0.0000 | 0.0000 | 50.0000 | 93.1034 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C1_5 | segdup | * | 0.0000 | 0.0000 | 50.0000 | 98.9717 | 0 | 0 | 30 | 30 | 1 | 3.3333 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 50.0000 | 94.8718 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 50.0000 | 93.3333 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l250_m0_e0 | * | 66.6667 | 100.0000 | 50.0000 | 99.7392 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l250_m0_e0 | het | 66.6667 | 100.0000 | 50.0000 | 99.5565 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 66.6667 | 100.0000 | 50.0000 | 99.4975 | 1 | 0 | 2 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 66.6667 | 100.0000 | 50.0000 | 99.4483 | 1 | 0 | 2 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | INDEL | C6_15 | map_siren | het | 0.0000 | 0.0000 | 50.0000 | 96.4637 | 0 | 0 | 9 | 9 | 1 | 11.1111 | |
| gduggal-snapvard | INDEL | D16_PLUS | func_cds | * | 14.2857 | 8.3333 | 50.0000 | 77.7778 | 1 | 11 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | func_cds | het | 20.0000 | 12.5000 | 50.0000 | 77.7778 | 1 | 7 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l125_m0_e0 | * | 33.3333 | 25.0000 | 50.0000 | 91.0448 | 3 | 9 | 3 | 3 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l125_m0_e0 | het | 40.0000 | 33.3333 | 50.0000 | 90.4762 | 3 | 6 | 3 | 3 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l125_m1_e0 | * | 22.8571 | 14.8148 | 50.0000 | 93.6508 | 4 | 23 | 4 | 4 | 1 | 25.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l125_m1_e0 | het | 28.5714 | 20.0000 | 50.0000 | 93.3884 | 4 | 16 | 4 | 4 | 1 | 25.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l125_m2_e0 | * | 22.8571 | 14.8148 | 50.0000 | 94.2446 | 4 | 23 | 4 | 4 | 1 | 25.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l125_m2_e0 | het | 28.5714 | 20.0000 | 50.0000 | 93.9394 | 4 | 16 | 4 | 4 | 1 | 25.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l125_m2_e1 | * | 22.2222 | 14.2857 | 50.0000 | 94.2857 | 4 | 24 | 4 | 4 | 1 | 25.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l125_m2_e1 | het | 28.5714 | 20.0000 | 50.0000 | 93.9850 | 4 | 16 | 4 | 4 | 1 | 25.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l250_m0_e0 | * | 66.6667 | 100.0000 | 50.0000 | 88.2353 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l250_m0_e0 | het | 66.6667 | 100.0000 | 50.0000 | 85.7143 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l250_m1_e0 | * | 33.3333 | 25.0000 | 50.0000 | 94.5946 | 1 | 3 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l250_m1_e0 | het | 40.0000 | 33.3333 | 50.0000 | 93.9394 | 1 | 2 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l250_m2_e0 | * | 28.5714 | 20.0000 | 50.0000 | 95.4545 | 1 | 4 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l250_m2_e0 | het | 40.0000 | 33.3333 | 50.0000 | 95.0000 | 1 | 2 | 1 | 1 | 0 | 0.0000 | |