PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
51151-51200 / 86044 show all | |||||||||||||||
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 47.8303 | 45.4143 | 50.5177 | 68.7660 | 1847 | 2220 | 1854 | 1816 | 1681 | 92.5661 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 53.8091 | 57.5758 | 50.5051 | 84.7692 | 76 | 56 | 50 | 49 | 21 | 42.8571 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 66.5254 | 97.5155 | 50.4823 | 35.8763 | 157 | 4 | 157 | 154 | 154 | 100.0000 | |
| gduggal-snapfb | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 66.7373 | 98.5222 | 50.4586 | 77.9321 | 3200 | 48 | 3246 | 3187 | 55 | 1.7258 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 61.5270 | 78.8288 | 50.4532 | 56.2459 | 350 | 94 | 334 | 328 | 326 | 99.3902 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 45.8395 | 42.0033 | 50.4468 | 47.0151 | 8651 | 11945 | 8637 | 8484 | 8329 | 98.1730 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 60.0266 | 74.1071 | 50.4425 | 79.7491 | 83 | 29 | 57 | 56 | 18 | 32.1429 | |
| ckim-dragen | INDEL | D1_5 | HG002compoundhet | homalt | 66.9786 | 99.6564 | 50.4394 | 90.3836 | 290 | 1 | 287 | 282 | 281 | 99.6454 | |
| anovak-vg | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 44.1057 | 39.2068 | 50.4037 | 54.9961 | 1562 | 2422 | 1748 | 1720 | 1273 | 74.0116 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 61.9472 | 80.3853 | 50.3893 | 46.9303 | 459 | 112 | 453 | 446 | 414 | 92.8251 | |
| anovak-vg | INDEL | D16_PLUS | HG002compoundhet | het | 47.7497 | 45.4321 | 50.3165 | 27.0208 | 184 | 221 | 477 | 471 | 319 | 67.7282 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 60.9324 | 77.3279 | 50.2732 | 71.4953 | 191 | 56 | 184 | 182 | 167 | 91.7582 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 63.5783 | 86.5217 | 50.2525 | 62.0690 | 199 | 31 | 199 | 197 | 181 | 91.8782 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 62.0349 | 81.0976 | 50.2283 | 77.7439 | 133 | 31 | 110 | 109 | 107 | 98.1651 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 57.9234 | 68.4909 | 50.1809 | 63.0076 | 413 | 190 | 416 | 413 | 407 | 98.5472 | |
| anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 43.3697 | 38.1944 | 50.1672 | 54.4901 | 110 | 178 | 300 | 298 | 216 | 72.4832 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 63.6275 | 87.0968 | 50.1217 | 72.1733 | 54 | 8 | 206 | 205 | 170 | 82.9268 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 33.1333 | 24.7505 | 50.1027 | 71.7681 | 248 | 754 | 244 | 243 | 215 | 88.4774 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 45.9086 | 42.3685 | 50.0943 | 72.1654 | 2118 | 2881 | 2125 | 2117 | 2097 | 99.0553 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 45.9086 | 42.3685 | 50.0943 | 72.1654 | 2118 | 2881 | 2125 | 2117 | 2097 | 99.0553 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 46.6247 | 43.6219 | 50.0715 | 62.1939 | 7000 | 9047 | 7003 | 6983 | 6898 | 98.7828 | |
| gduggal-snapplat | INDEL | * | HG002compoundhet | * | 42.2745 | 36.5854 | 50.0587 | 72.5688 | 10961 | 18999 | 11522 | 11495 | 5404 | 47.0117 | |
| gduggal-snapfb | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 66.6667 | 100.0000 | 50.0000 | 94.9153 | 4 | 0 | 3 | 3 | 1 | 33.3333 | |
| gduggal-snapfb | INDEL | I1_5 | map_l250_m2_e0 | hetalt | 66.6667 | 100.0000 | 50.0000 | 97.0149 | 2 | 0 | 2 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l250_m2_e1 | hetalt | 66.6667 | 100.0000 | 50.0000 | 97.0370 | 2 | 0 | 2 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | I6_15 | func_cds | hetalt | 50.0000 | 50.0000 | 50.0000 | 33.3333 | 2 | 2 | 1 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l100_m0_e0 | hetalt | 60.0000 | 75.0000 | 50.0000 | 80.0000 | 3 | 1 | 1 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | * | map_l125_m0_e0 | hetalt | 26.6667 | 18.1818 | 50.0000 | 99.5943 | 2 | 9 | 1 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | * | map_l150_m0_e0 | hetalt | 30.7692 | 22.2222 | 50.0000 | 99.5050 | 2 | 7 | 1 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 50.0000 | 50.0000 | 50.0000 | 97.9522 | 3 | 3 | 3 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 97.5904 | 3 | 0 | 3 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 50.0000 | 50.0000 | 50.0000 | 98.5348 | 2 | 2 | 2 | 2 | 1 | 50.0000 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 98.2684 | 2 | 0 | 2 | 2 | 1 | 50.0000 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 50.0000 | 50.0000 | 50.0000 | 90.4762 | 1 | 1 | 1 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 89.4737 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 30.4000 | 21.8391 | 50.0000 | 86.7133 | 19 | 68 | 19 | 19 | 18 | 94.7368 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 57.1429 | 66.6667 | 50.0000 | 84.9206 | 18 | 9 | 19 | 19 | 18 | 94.7368 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 43.9024 | 39.1304 | 50.0000 | 86.0465 | 9 | 14 | 9 | 9 | 8 | 88.8889 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 45.0000 | 40.9091 | 50.0000 | 82.1782 | 9 | 13 | 9 | 9 | 8 | 88.8889 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l125_m0_e0 | * | 50.0000 | 50.0000 | 50.0000 | 86.6667 | 3 | 3 | 3 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l125_m0_e0 | het | 66.6667 | 100.0000 | 50.0000 | 84.6154 | 3 | 0 | 3 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l250_m1_e0 | * | 66.6667 | 100.0000 | 50.0000 | 95.2381 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l250_m1_e0 | het | 66.6667 | 100.0000 | 50.0000 | 94.7368 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l250_m2_e0 | * | 66.6667 | 100.0000 | 50.0000 | 95.6522 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l250_m2_e0 | het | 66.6667 | 100.0000 | 50.0000 | 95.0000 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l250_m2_e1 | * | 66.6667 | 100.0000 | 50.0000 | 95.9184 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l250_m2_e1 | het | 66.6667 | 100.0000 | 50.0000 | 95.3488 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 6.3636 | 3.3981 | 50.0000 | 96.8254 | 7 | 199 | 2 | 2 | 1 | 50.0000 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 50.0000 | 50.0000 | 50.0000 | 93.7500 | 1 | 1 | 1 | 1 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | I6_15 | map_l250_m0_e0 | * | 66.6667 | 100.0000 | 50.0000 | 98.5185 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |