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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1009 1010 1011 1012 1013 1014 1015 1016 1017 ... 1720 1721 » 50601-50650 / 86044 show all
gduggal-snapvard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	55.8708	55.0239	56.7442	69.7183	115	94	122	93	53	56.9892
anovak-vg	INDEL	I1_5	map_l250_m2_e1	*	59.7641	63.1579	56.7164	96.7476	72	42	76	58	33	56.8966
anovak-vg	INDEL	C1_5	HG002complexvar	*	63.2248	71.4286	56.7114	83.4812	5	2	169	129	19	14.7287
gduggal-snapvard	INDEL	I6_15	map_l125_m2_e1	*	60.1890	64.1509	56.6879	82.9162	34	19	89	68	53	77.9412
gduggal-snapplat	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	56.1235	55.5743	56.6836	94.3491	1316	1052	1340	1024	94	9.1797
ciseli-custom	SNP	*	HG002compoundhet	het	65.9081	78.7276	56.6789	49.8597	11162	3016	11240	8591	230	2.6772
gduggal-snapvard	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	63.1329	71.2580	56.6710	76.9439	895	361	1304	997	490	49.1474
gduggal-snapvard	INDEL	D6_15	map_l250_m2_e0	*	57.8534	59.0909	56.6667	94.8980	13	9	17	13	7	53.8462
anovak-vg	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	60.2265	64.3636	56.5891	50.4418	531	294	730	560	480	85.7143
anovak-vg	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	60.2265	64.3636	56.5891	50.4418	531	294	730	560	480	85.7143
qzeng-custom	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	66.9540	81.9672	56.5891	68.9157	50	11	146	112	91	81.2500
ghariani-varprowl	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	68.6915	87.3964	56.5817	68.5791	527	76	533	409	399	97.5550
anovak-vg	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	49.4570	43.9271	56.5797	43.4855	4868	6214	5009	3844	2967	77.1852
anovak-vg	INDEL	I1_5	map_l250_m2_e1	homalt	69.2187	89.1304	56.5789	95.1592	41	5	43	33	30	90.9091
gduggal-bwavard	INDEL	I16_PLUS	map_siren	het	68.1638	85.7143	56.5789	85.0099	42	7	43	33	20	60.6061
anovak-vg	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	43.4211	35.2336	56.5657	54.1348	1131	2079	1120	860	639	74.3023
ciseli-custom	INDEL	D6_15	map_l125_m2_e1	*	55.2000	53.9062	56.5574	92.2687	69	59	69	53	29	54.7170
gduggal-bwavard	INDEL	C1_5	lowcmp_SimpleRepeat_diTR_11to50	het	0.0000	0.0000	56.5517	95.0274	0	0	82	63	11	17.4603
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	70.6236	94.0299	56.5476	85.1656	189	12	190	146	135	92.4658
eyeh-varpipe	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	19.0690	11.4688	56.5315	43.2950	57	440	251	193	191	98.9637
gduggal-bwavard	INDEL	C6_15	lowcmp_SimpleRepeat_quadTR_11to50	*	0.0000	0.0000	56.5217	91.5751	0	0	26	20	8	40.0000
mlin-fermikit	INDEL	D16_PLUS	lowcmp_SimpleRepeat_homopolymer_gt10	homalt	68.4211	86.6667	56.5217	98.1437	13	2	13	10	10	100.0000
ghariani-varprowl	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	*	53.0600	50.0000	56.5189	40.9091	865	865	867	667	662	99.2504
ghariani-varprowl	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	70.4099	93.3699	56.5131	85.6582	2211	157	2269	1746	174	9.9656
jpowers-varprowl	INDEL	I16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	62.3309	69.4954	56.5056	75.4786	303	133	304	234	232	99.1453
anovak-vg	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	*	49.2492	43.6456	56.5037	39.7780	4128	5330	4231	3257	2430	74.6085
gduggal-bwavard	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	68.4389	86.7948	56.4917	55.1969	1400	213	1388	1069	1020	95.4163
ciseli-custom	INDEL	D6_15	map_l100_m2_e1	*	53.5373	50.9091	56.4516	88.7681	140	135	140	108	64	59.2593
eyeh-varpipe	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	69.9877	92.1053	56.4356	92.2038	140	12	114	88	4	4.5455
qzeng-custom	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_gt10	*	63.9167	73.6842	56.4356	98.6567	42	15	57	44	0	0.0000
anovak-vg	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	64.5845	75.5146	56.4183	33.5145	5576	1808	8421	6505	5048	77.6018
ciseli-custom	INDEL	*	tech_badpromoters	het	56.4103	56.4103	56.4103	50.6329	22	17	22	17	10	58.8235
gduggal-snapplat	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	56.5111	56.6123	56.4103	93.4064	625	479	638	493	43	8.7221
gduggal-snapvard	INDEL	I6_15	map_l125_m2_e0	*	60.0321	64.1509	56.4103	82.6087	34	19	88	68	53	77.9412
gduggal-bwafb	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	69.9603	92.1053	56.4000	92.3571	140	12	141	109	7	6.4220
anovak-vg	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	60.5316	65.3226	56.3953	87.8359	81	43	97	75	22	29.3333
anovak-vg	INDEL	I1_5	map_l250_m2_e0	*	59.4374	62.8319	56.3910	96.6841	71	42	75	58	33	56.8966
gduggal-bwavard	INDEL	C1_5	map_l100_m1_e0	*	0.0000	0.0000	56.3830	94.8996	0	0	53	41	4	9.7561
gduggal-snapvard	INDEL	C6_15	HG002complexvar	*	72.1017	100.0000	56.3743	72.3480	4	0	482	373	150	40.2145
jpowers-varprowl	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	64.5916	75.6355	56.3620	56.7025	1220	393	1227	950	942	99.1579
ciseli-custom	INDEL	D6_15	map_l100_m1_e0	*	53.8462	51.5504	56.3559	88.4200	133	125	133	103	60	58.2524
qzeng-custom	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	het	62.5431	70.2703	56.3470	39.8682	104	44	617	478	306	64.0167
ciseli-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	46.8191	40.0480	56.3456	64.3182	2002	2997	1989	1541	1431	92.8618
ciseli-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	46.8191	40.0480	56.3456	64.3182	2002	2997	1989	1541	1431	92.8618
eyeh-varpipe	SNP	*	tech_badpromoters	het	72.0379	100.0000	56.2963	72.9459	77	0	76	59	0	0.0000
gduggal-snapvard	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	het	66.7314	81.9672	56.2718	32.0710	100	22	323	251	223	88.8446
ciseli-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	71.0216	96.2525	56.2712	87.6827	488	19	498	387	79	20.4134
jpowers-varprowl	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	68.7607	88.3768	56.2708	60.0546	12158	1599	12195	9477	9356	98.7232
jpowers-varprowl	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	68.7607	88.3768	56.2708	60.0546	12158	1599	12195	9477	9356	98.7232
anovak-vg	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	60.1585	64.6439	56.2551	36.6040	9449	5168	18693	14536	11429	78.6255

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