PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
50501-50550 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 58.2286 | 59.3301 | 57.1672 | 32.0973 | 248 | 170 | 335 | 251 | 223 | 88.8446 | |
| gduggal-snapfb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 71.8992 | 96.8668 | 57.1649 | 88.9701 | 371 | 12 | 371 | 278 | 23 | 8.2734 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 69.0793 | 87.2712 | 57.1635 | 56.5737 | 2146 | 313 | 6735 | 5047 | 4364 | 86.4672 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 72.0736 | 97.5227 | 57.1579 | 53.3629 | 1614 | 41 | 1625 | 1218 | 1207 | 99.0969 | |
| gduggal-snapvard | INDEL | I6_15 | * | * | 50.7754 | 45.6827 | 57.1459 | 41.2412 | 11338 | 13481 | 13483 | 10111 | 8109 | 80.1998 | |
| gduggal-snapvard | INDEL | I6_15 | map_l100_m0_e0 | * | 57.3585 | 57.5758 | 57.1429 | 81.9063 | 19 | 14 | 64 | 48 | 36 | 75.0000 | |
| ghariani-varprowl | INDEL | I6_15 | map_l125_m0_e0 | het | 50.0000 | 44.4444 | 57.1429 | 96.9957 | 4 | 5 | 4 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I6_15 | map_l150_m0_e0 | * | 53.3333 | 50.0000 | 57.1429 | 96.8326 | 4 | 4 | 4 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I6_15 | map_l250_m2_e0 | * | 53.3333 | 50.0000 | 57.1429 | 97.7049 | 4 | 4 | 4 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I6_15 | map_l250_m2_e1 | * | 53.3333 | 50.0000 | 57.1429 | 97.7987 | 4 | 4 | 4 | 3 | 2 | 66.6667 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 21.2389 | 13.0435 | 57.1429 | 46.1538 | 3 | 20 | 4 | 3 | 3 | 100.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 66.6667 | 80.0000 | 57.1429 | 95.0355 | 4 | 1 | 4 | 3 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 14.8148 | 8.5106 | 57.1429 | 80.5556 | 4 | 43 | 4 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | INDEL | * | decoy | het | 42.1053 | 33.3333 | 57.1429 | 99.9727 | 2 | 4 | 4 | 3 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 56.0510 | 55.0000 | 57.1429 | 99.8789 | 11 | 9 | 4 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 64.8649 | 75.0000 | 57.1429 | 99.8626 | 9 | 3 | 4 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 60.6897 | 64.7059 | 57.1429 | 99.8738 | 11 | 6 | 4 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 69.9029 | 90.0000 | 57.1429 | 99.8562 | 9 | 1 | 4 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 53.3333 | 50.0000 | 57.1429 | 99.4104 | 3 | 3 | 12 | 9 | 6 | 66.6667 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 31.7845 | 22.0149 | 57.1429 | 50.2269 | 118 | 418 | 188 | 141 | 135 | 95.7447 | |
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 57.1429 | 92.0455 | 0 | 0 | 4 | 3 | 2 | 66.6667 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 58.3333 | 59.5745 | 57.1429 | 50.5051 | 28 | 19 | 28 | 21 | 12 | 57.1429 | |
| gduggal-snapfb | INDEL | * | map_l125_m0_e0 | hetalt | 64.0000 | 72.7273 | 57.1429 | 96.1111 | 8 | 3 | 4 | 3 | 1 | 33.3333 | |
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 0.0000 | 0.0000 | 57.1429 | 95.1389 | 0 | 0 | 4 | 3 | 2 | 66.6667 | |
| gduggal-bwavard | INDEL | C1_5 | map_siren | * | 0.0000 | 0.0000 | 57.1429 | 94.8112 | 0 | 0 | 84 | 63 | 9 | 14.2857 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 57.1429 | 96.3565 | 0 | 0 | 32 | 24 | 12 | 50.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | HG002compoundhet | homalt | 53.3333 | 50.0000 | 57.1429 | 61.1111 | 4 | 4 | 4 | 3 | 3 | 100.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l125_m0_e0 | het | 69.5652 | 88.8889 | 57.1429 | 96.0114 | 8 | 1 | 8 | 6 | 1 | 16.6667 | |
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 14.8148 | 8.5106 | 57.1429 | 80.5556 | 4 | 43 | 4 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 57.1429 | 96.2963 | 0 | 0 | 4 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 66.6667 | 80.0000 | 57.1429 | 91.3580 | 4 | 1 | 4 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 53.3333 | 50.0000 | 57.1429 | 89.8551 | 8 | 8 | 8 | 6 | 5 | 83.3333 | |
| ckim-isaac | INDEL | D16_PLUS | map_l100_m0_e0 | * | 22.8571 | 14.2857 | 57.1429 | 94.9640 | 4 | 24 | 4 | 3 | 1 | 33.3333 | |
| ckim-isaac | INDEL | D16_PLUS | map_l100_m1_e0 | het | 26.6667 | 17.3913 | 57.1429 | 93.5484 | 8 | 38 | 8 | 6 | 3 | 50.0000 | |
| ckim-isaac | INDEL | D16_PLUS | map_l100_m2_e0 | het | 28.2353 | 18.7500 | 57.1429 | 94.4444 | 9 | 39 | 8 | 6 | 3 | 50.0000 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 72.7273 | 100.0000 | 57.1429 | 99.9868 | 1 | 0 | 4 | 3 | 2 | 66.6667 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 72.7273 | 100.0000 | 57.1429 | 99.7676 | 1 | 0 | 4 | 3 | 2 | 66.6667 | |
| ciseli-custom | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 66.6667 | 80.0000 | 57.1429 | 94.5312 | 4 | 1 | 4 | 3 | 1 | 33.3333 | |
| ciseli-custom | INDEL | D6_15 | map_l150_m1_e0 | * | 55.9441 | 54.7945 | 57.1429 | 94.0171 | 40 | 33 | 40 | 30 | 13 | 43.3333 | |
| cchapple-custom | INDEL | C1_5 | map_l100_m0_e0 | * | 0.0000 | 0.0000 | 57.1429 | 94.9091 | 0 | 0 | 16 | 12 | 5 | 41.6667 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 57.1429 | 95.5414 | 0 | 0 | 4 | 3 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l125_m0_e0 | * | 61.5385 | 66.6667 | 57.1429 | 92.6316 | 4 | 2 | 8 | 6 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l250_m1_e0 | het | 53.3333 | 50.0000 | 57.1429 | 98.2544 | 2 | 2 | 4 | 3 | 1 | 33.3333 | |
| qzeng-custom | INDEL | I6_15 | map_l250_m2_e0 | het | 58.5366 | 60.0000 | 57.1429 | 98.3683 | 3 | 2 | 4 | 3 | 1 | 33.3333 | |
| qzeng-custom | INDEL | I6_15 | map_l250_m2_e1 | het | 58.5366 | 60.0000 | 57.1429 | 98.4091 | 3 | 2 | 4 | 3 | 1 | 33.3333 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 72.7273 | 100.0000 | 57.1429 | 99.4996 | 4 | 0 | 4 | 3 | 1 | 33.3333 | |
| mlin-fermikit | INDEL | I6_15 | map_l150_m2_e1 | homalt | 53.3333 | 50.0000 | 57.1429 | 92.0455 | 4 | 4 | 4 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 59.7015 | 62.5000 | 57.1429 | 82.5000 | 5 | 3 | 4 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 72.7273 | 100.0000 | 57.1429 | 84.7826 | 4 | 0 | 4 | 3 | 3 | 100.0000 | |
| qzeng-custom | INDEL | C1_5 | * | hetalt | 72.7273 | 100.0000 | 57.1429 | 96.7890 | 1 | 0 | 8 | 6 | 4 | 66.6667 | |