PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5001-5050 / 86044 show all | |||||||||||||||
| gduggal-bwavard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 86.3636 | 76.0000 | 100.0000 | 50.1639 | 152 | 48 | 152 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 88.4481 | 79.2887 | 100.0000 | 56.8627 | 379 | 99 | 374 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 88.2068 | 78.9017 | 100.0000 | 60.9898 | 273 | 73 | 268 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 15.7303 | 8.5366 | 100.0000 | 84.6154 | 7 | 75 | 6 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 38.1546 | 23.5747 | 100.0000 | 63.5697 | 153 | 496 | 149 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 40.7252 | 25.5692 | 100.0000 | 61.8667 | 146 | 425 | 143 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 65.1402 | 48.3022 | 100.0000 | 66.1836 | 569 | 609 | 560 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 85.9454 | 75.3546 | 100.0000 | 48.7179 | 425 | 139 | 420 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 5.6604 | 2.9126 | 100.0000 | 95.4545 | 6 | 200 | 2 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 36.3636 | 22.2222 | 100.0000 | 95.3488 | 6 | 21 | 2 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 0.0000 | 100.0000 | 99.8930 | 0 | 1 | 6 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 0.0000 | 100.0000 | 99.9127 | 0 | 0 | 4 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 0.0000 | 100.0000 | 99.8051 | 0 | 0 | 2 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 89.6694 | 81.2734 | 100.0000 | 41.5512 | 217 | 50 | 211 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I1_5 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.1039 | 9 | 0 | 9 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I1_5 | tech_badpromoters | homalt | 81.8182 | 69.2308 | 100.0000 | 43.7500 | 9 | 4 | 9 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I6_15 | func_cds | homalt | 88.8889 | 80.0000 | 100.0000 | 7.1429 | 12 | 3 | 13 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 64.1509 | 47.2222 | 100.0000 | 59.5238 | 17 | 19 | 17 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 70.4225 | 54.3478 | 100.0000 | 51.0204 | 50 | 42 | 48 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 74.0741 | 58.8235 | 100.0000 | 50.0000 | 40 | 28 | 38 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 83.3333 | 71.4286 | 100.0000 | 70.1613 | 35 | 14 | 37 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 78.3505 | 64.4068 | 100.0000 | 47.9452 | 38 | 21 | 38 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I6_15 | map_l100_m0_e0 | homalt | 73.6842 | 58.3333 | 100.0000 | 77.4194 | 7 | 5 | 7 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I6_15 | map_l125_m0_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 90.4762 | 2 | 4 | 2 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I6_15 | map_l150_m0_e0 | homalt | 40.0000 | 25.0000 | 100.0000 | 94.7368 | 1 | 3 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I6_15 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.3333 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I6_15 | map_l250_m1_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 95.6522 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I6_15 | map_l250_m2_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 96.0000 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I6_15 | map_l250_m2_e1 | homalt | 50.0000 | 33.3333 | 100.0000 | 96.4286 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I6_15 | segdup | homalt | 82.5000 | 70.2128 | 100.0000 | 88.7681 | 33 | 14 | 31 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I6_15 | tech_badpromoters | homalt | 50.0000 | 33.3333 | 100.0000 | 66.6667 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwavard | SNP | * | decoy | * | 0.0000 | 0.0000 | 100.0000 | 99.9992 | 0 | 0 | 2 | 0 | 0 | ||
| gduggal-bwavard | SNP | * | decoy | homalt | 0.0000 | 0.0000 | 100.0000 | 99.9933 | 0 | 0 | 2 | 0 | 0 | ||
| gduggal-bwavard | SNP | * | func_cds | homalt | 99.5466 | 99.0973 | 100.0000 | 21.7886 | 6916 | 63 | 6874 | 0 | 0 | ||
| gduggal-bwavard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.5178 | 97.0789 | 100.0000 | 47.9893 | 1562 | 47 | 1552 | 0 | 0 | ||
| gduggal-bwavard | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 88.8889 | 80.0000 | 100.0000 | 93.1429 | 12 | 3 | 12 | 0 | 0 | ||
| gduggal-bwavard | SNP | * | tech_badpromoters | homalt | 93.3333 | 87.5000 | 100.0000 | 42.8571 | 70 | 10 | 68 | 0 | 0 | ||
| gduggal-bwavard | SNP | ti | decoy | * | 0.0000 | 0.0000 | 100.0000 | 99.9987 | 0 | 0 | 2 | 0 | 0 | ||
| gduggal-bwavard | SNP | ti | decoy | homalt | 0.0000 | 0.0000 | 100.0000 | 99.9898 | 0 | 0 | 2 | 0 | 0 | ||
| gduggal-bwavard | SNP | ti | func_cds | homalt | 99.6099 | 99.2227 | 100.0000 | 20.4486 | 5234 | 41 | 5213 | 0 | 0 | ||
| gduggal-bwavard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.4241 | 96.8972 | 100.0000 | 48.3349 | 1093 | 35 | 1086 | 0 | 0 | ||
| gduggal-bwavard | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 90.9091 | 83.3333 | 100.0000 | 94.1860 | 5 | 1 | 5 | 0 | 0 | ||
| gduggal-bwavard | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.2943 | 98.5985 | 100.0000 | 25.4409 | 1407 | 20 | 1395 | 0 | 0 | ||
| gduggal-bwavard | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 98.4064 | 6 | 0 | 4 | 0 | 0 | ||
| gduggal-bwavard | SNP | ti | tech_badpromoters | homalt | 93.5065 | 87.8049 | 100.0000 | 38.9831 | 36 | 5 | 36 | 0 | 0 | ||
| gduggal-bwavard | SNP | tv | decoy | * | 0.0000 | 0.0000 | 100.0000 | 99.9989 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-bwavard | SNP | tv | decoy | homalt | 0.0000 | 0.0000 | 100.0000 | 99.9905 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-bwavard | SNP | tv | func_cds | homalt | 99.3503 | 98.7089 | 100.0000 | 25.9620 | 1682 | 22 | 1674 | 0 | 0 | ||
| gduggal-bwavard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.7368 | 97.5052 | 100.0000 | 47.4691 | 469 | 12 | 467 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | map_l100_m0_e0 | hetalt | 84.2105 | 72.7273 | 100.0000 | 94.4444 | 24 | 9 | 12 | 0 | 0 | ||