PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
50101-50150 / 86044 show all | |||||||||||||||
| anovak-vg | INDEL | I6_15 | tech_badpromoters | homalt | 75.0000 | 100.0000 | 60.0000 | 54.5455 | 3 | 0 | 3 | 2 | 2 | 100.0000 | |
| anovak-vg | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 65.2174 | 71.4286 | 60.0000 | 94.8454 | 5 | 2 | 6 | 4 | 2 | 50.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l250_m1_e0 | het | 75.0000 | 100.0000 | 60.0000 | 97.0930 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l250_m2_e0 | het | 75.0000 | 100.0000 | 60.0000 | 97.6526 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l250_m2_e1 | het | 75.0000 | 100.0000 | 60.0000 | 97.6852 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_l250_m1_e0 | het | 75.0000 | 100.0000 | 60.0000 | 97.2826 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_l250_m2_e0 | het | 75.0000 | 100.0000 | 60.0000 | 97.8355 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_l250_m2_e1 | het | 75.0000 | 100.0000 | 60.0000 | 97.8632 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I16_PLUS | map_l125_m2_e0 | homalt | 75.0000 | 100.0000 | 60.0000 | 97.7578 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I16_PLUS | map_l125_m2_e1 | homalt | 75.0000 | 100.0000 | 60.0000 | 97.7578 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| anovak-vg | INDEL | C1_5 | map_l125_m1_e0 | * | 0.0000 | 0.0000 | 60.0000 | 97.5124 | 0 | 0 | 3 | 2 | 0 | 0.0000 | |
| anovak-vg | INDEL | C1_5 | map_l125_m2_e0 | * | 0.0000 | 0.0000 | 60.0000 | 97.7578 | 0 | 0 | 3 | 2 | 0 | 0.0000 | |
| anovak-vg | INDEL | C1_5 | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 60.0000 | 97.7679 | 0 | 0 | 3 | 2 | 0 | 0.0000 | |
| anovak-vg | INDEL | C1_5 | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 60.0000 | 97.1591 | 0 | 0 | 3 | 2 | 0 | 0.0000 | |
| anovak-vg | INDEL | C1_5 | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 60.0000 | 97.3958 | 0 | 0 | 3 | 2 | 0 | 0.0000 | |
| anovak-vg | INDEL | C1_5 | map_l150_m2_e1 | * | 0.0000 | 0.0000 | 60.0000 | 97.4093 | 0 | 0 | 3 | 2 | 0 | 0.0000 | |
| anovak-vg | INDEL | C1_5 | segdup | * | 0.0000 | 0.0000 | 60.0000 | 99.0619 | 0 | 0 | 3 | 2 | 0 | 0.0000 | |
| anovak-vg | INDEL | C1_5 | segdup | het | 0.0000 | 0.0000 | 60.0000 | 98.8610 | 0 | 0 | 3 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l125_m2_e0 | homalt | 75.0000 | 100.0000 | 60.0000 | 97.7376 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l125_m2_e1 | homalt | 75.0000 | 100.0000 | 60.0000 | 97.7376 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 60.0000 | 98.0620 | 0 | 0 | 6 | 4 | 3 | 75.0000 | |
| jlack-gatk | SNP | * | map_l150_m0_e0 | hetalt | 75.0000 | 100.0000 | 60.0000 | 94.7368 | 3 | 0 | 3 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | ti | map_l150_m0_e0 | hetalt | 75.0000 | 100.0000 | 60.0000 | 91.6667 | 3 | 0 | 3 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | tv | map_l150_m0_e0 | hetalt | 75.0000 | 100.0000 | 60.0000 | 94.7368 | 3 | 0 | 3 | 2 | 2 | 100.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l250_m1_e0 | het | 75.0000 | 100.0000 | 60.0000 | 98.0620 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l250_m2_e0 | het | 75.0000 | 100.0000 | 60.0000 | 98.3923 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l250_m2_e1 | het | 75.0000 | 100.0000 | 60.0000 | 98.4076 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_l250_m1_e0 | het | 75.0000 | 100.0000 | 60.0000 | 96.6443 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_l250_m2_e0 | het | 75.0000 | 100.0000 | 60.0000 | 97.1751 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_l250_m2_e1 | het | 75.0000 | 100.0000 | 60.0000 | 97.2376 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l250_m1_e0 | het | 75.0000 | 100.0000 | 60.0000 | 95.5752 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l250_m2_e0 | het | 75.0000 | 100.0000 | 60.0000 | 96.1832 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l250_m2_e1 | het | 75.0000 | 100.0000 | 60.0000 | 96.2406 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l125_m2_e0 | homalt | 75.0000 | 100.0000 | 60.0000 | 97.1591 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l125_m2_e1 | homalt | 75.0000 | 100.0000 | 60.0000 | 97.1591 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l250_m1_e0 | het | 75.0000 | 100.0000 | 60.0000 | 98.1203 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l250_m2_e0 | het | 75.0000 | 100.0000 | 60.0000 | 98.4520 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l250_m2_e1 | het | 75.0000 | 100.0000 | 60.0000 | 98.4709 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 50.4202 | 43.4783 | 60.0000 | 40.6780 | 20 | 26 | 21 | 14 | 13 | 92.8571 | |
| ciseli-custom | INDEL | D6_15 | map_l150_m0_e0 | homalt | 70.5882 | 85.7143 | 60.0000 | 94.7368 | 6 | 1 | 6 | 4 | 3 | 75.0000 | |
| ciseli-custom | INDEL | D6_15 | map_l150_m2_e0 | homalt | 66.6667 | 75.0000 | 60.0000 | 90.9561 | 21 | 7 | 21 | 14 | 12 | 85.7143 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 18.7500 | 11.1111 | 60.0000 | 95.6522 | 3 | 24 | 3 | 2 | 1 | 50.0000 | |
| ciseli-custom | INDEL | I1_5 | map_l150_m0_e0 | * | 51.7241 | 45.4545 | 60.0000 | 94.3966 | 80 | 96 | 78 | 52 | 39 | 75.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l125_m1_e0 | homalt | 30.0000 | 20.0000 | 60.0000 | 91.3793 | 3 | 12 | 3 | 2 | 1 | 50.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l125_m2_e0 | homalt | 30.0000 | 20.0000 | 60.0000 | 92.7536 | 3 | 12 | 3 | 2 | 1 | 50.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l125_m2_e1 | homalt | 30.0000 | 20.0000 | 60.0000 | 92.8571 | 3 | 12 | 3 | 2 | 1 | 50.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l150_m2_e1 | * | 18.7500 | 11.1111 | 60.0000 | 97.2973 | 3 | 24 | 3 | 2 | 1 | 50.0000 | |
| ciseli-custom | SNP | * | map_l250_m2_e0 | hetalt | 60.0000 | 60.0000 | 60.0000 | 90.7407 | 3 | 2 | 3 | 2 | 2 | 100.0000 | |
| ciseli-custom | SNP | * | map_l250_m2_e1 | hetalt | 60.0000 | 60.0000 | 60.0000 | 90.9091 | 3 | 2 | 3 | 2 | 2 | 100.0000 | |
| ciseli-custom | SNP | ti | map_l250_m2_e0 | hetalt | 60.0000 | 60.0000 | 60.0000 | 83.3333 | 3 | 2 | 3 | 2 | 2 | 100.0000 | |