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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
49901-49950 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 87.3637 | 80.6250 | 95.3317 | 77.1605 | 387 | 93 | 388 | 19 | 18 | 94.7368 | |
| ckim-vqsr | INDEL | D1_5 | map_l100_m0_e0 | het | 96.0537 | 96.7851 | 95.3333 | 90.9829 | 572 | 19 | 572 | 28 | 2 | 7.1429 | |
| gduggal-snapfb | SNP | * | map_l125_m2_e0 | het | 96.4331 | 97.5578 | 95.3341 | 73.4403 | 28602 | 716 | 28605 | 1400 | 602 | 43.0000 | |
| gduggal-snapfb | INDEL | * | map_siren | * | 93.6644 | 92.0513 | 95.3350 | 81.9963 | 6821 | 589 | 6887 | 337 | 103 | 30.5638 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 89.0929 | 83.6170 | 95.3363 | 63.5012 | 1179 | 231 | 1942 | 95 | 38 | 40.0000 | |
| ghariani-varprowl | SNP | ti | segdup | het | 97.4023 | 99.5594 | 95.3366 | 92.6943 | 11977 | 53 | 11980 | 586 | 2 | 0.3413 | |
| gduggal-snapfb | INDEL | D1_5 | map_l125_m2_e0 | * | 96.0014 | 96.6754 | 95.3368 | 86.9241 | 1105 | 38 | 1104 | 54 | 9 | 16.6667 | |
| eyeh-varpipe | SNP | tv | HG002compoundhet | * | 97.1567 | 99.0474 | 95.3368 | 45.3099 | 8838 | 85 | 7176 | 351 | 78 | 22.2222 | |
| ckim-vqsr | INDEL | I1_5 | map_l125_m0_e0 | het | 95.5844 | 95.8333 | 95.3368 | 94.0906 | 184 | 8 | 184 | 9 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 92.7288 | 90.2597 | 95.3368 | 64.7810 | 556 | 60 | 552 | 27 | 25 | 92.5926 | |
| ndellapenna-hhga | INDEL | * | map_siren | hetalt | 85.8846 | 78.1377 | 95.3368 | 88.2532 | 193 | 54 | 184 | 9 | 5 | 55.5556 | |
| gduggal-snapplat | SNP | * | map_l100_m1_e0 | het | 95.1709 | 95.0043 | 95.3380 | 79.9679 | 43093 | 2266 | 43129 | 2109 | 1058 | 50.1660 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 73.7705 | 60.1604 | 95.3390 | 57.0128 | 225 | 149 | 225 | 11 | 10 | 90.9091 | |
| gduggal-bwafb | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 96.7961 | 98.2976 | 95.3398 | 72.9184 | 9527 | 165 | 9554 | 467 | 126 | 26.9807 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 94.3762 | 93.4319 | 95.3398 | 81.6399 | 569 | 40 | 491 | 24 | 16 | 66.6667 | |
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 97.4056 | 99.5621 | 95.3406 | 49.3281 | 10685 | 47 | 10497 | 513 | 52 | 10.1365 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 55.2595 | 38.9041 | 95.3409 | 37.9408 | 852 | 1338 | 839 | 41 | 31 | 75.6098 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 94.9622 | 94.5860 | 95.3414 | 70.8976 | 1188 | 68 | 1187 | 58 | 6 | 10.3448 | |
| anovak-vg | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 96.0247 | 96.7157 | 95.3435 | 43.9443 | 4535 | 154 | 4607 | 225 | 89 | 39.5556 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 95.1579 | 94.9718 | 95.3448 | 39.6821 | 3872 | 205 | 3871 | 189 | 179 | 94.7090 | |
| egarrison-hhga | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 74.8782 | 61.6438 | 95.3488 | 77.1277 | 45 | 28 | 41 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 76.5438 | 63.9344 | 95.3488 | 51.1364 | 39 | 22 | 41 | 2 | 1 | 50.0000 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 43.2741 | 27.9883 | 95.3488 | 70.3448 | 96 | 247 | 82 | 4 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 88.8822 | 83.2370 | 95.3488 | 70.9740 | 288 | 58 | 287 | 14 | 13 | 92.8571 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 92.1348 | 89.1304 | 95.3488 | 63.5593 | 41 | 5 | 41 | 2 | 2 | 100.0000 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 92.1348 | 89.1304 | 95.3488 | 65.6000 | 41 | 5 | 41 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | I1_5 | map_l250_m1_e0 | homalt | 94.2529 | 93.1818 | 95.3488 | 91.6988 | 41 | 3 | 41 | 2 | 1 | 50.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 92.1348 | 89.1304 | 95.3488 | 68.6131 | 41 | 5 | 41 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 92.1348 | 89.1304 | 95.3488 | 68.1481 | 41 | 5 | 41 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 91.1502 | 87.3057 | 95.3488 | 87.7362 | 337 | 49 | 328 | 16 | 1 | 6.2500 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 92.1348 | 89.1304 | 95.3488 | 63.8655 | 41 | 5 | 41 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 97.3750 | 99.4887 | 95.3492 | 61.3437 | 16345 | 84 | 16381 | 799 | 639 | 79.9750 | |
| dgrover-gatk | INDEL | * | HG002compoundhet | * | 95.1627 | 94.9733 | 95.3528 | 63.3096 | 28454 | 1506 | 28336 | 1381 | 1370 | 99.2035 | |
| asubramanian-gatk | INDEL | D6_15 | HG002compoundhet | * | 94.5808 | 93.8213 | 95.3528 | 36.4670 | 8473 | 558 | 8474 | 413 | 394 | 95.3995 | |
| jpowers-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 97.3815 | 99.4979 | 95.3533 | 74.7822 | 11494 | 58 | 11512 | 561 | 264 | 47.0588 | |
| jpowers-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 97.3815 | 99.4979 | 95.3533 | 74.7822 | 11494 | 58 | 11512 | 561 | 264 | 47.0588 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 93.3984 | 91.5194 | 95.3560 | 62.7021 | 259 | 24 | 308 | 15 | 12 | 80.0000 | |
| gduggal-snapfb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 97.2641 | 99.2497 | 95.3564 | 60.4398 | 1455 | 11 | 1458 | 71 | 8 | 11.2676 | |
| asubramanian-gatk | INDEL | D1_5 | map_l125_m2_e1 | * | 91.8963 | 88.6776 | 95.3575 | 90.2011 | 1026 | 131 | 1027 | 50 | 5 | 10.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 95.3994 | 95.4409 | 95.3578 | 49.7393 | 5422 | 259 | 5423 | 264 | 128 | 48.4848 | |
| ltrigg-rtg2 | INDEL | I1_5 | HG002compoundhet | het | 95.9122 | 96.4706 | 95.3602 | 73.5551 | 820 | 30 | 781 | 38 | 14 | 36.8421 | |
| ndellapenna-hhga | INDEL | I16_PLUS | * | * | 92.8570 | 90.4814 | 95.3607 | 63.8712 | 5770 | 607 | 5776 | 281 | 194 | 69.0391 | |
| gduggal-snapfb | SNP | * | map_l125_m2_e1 | het | 96.4602 | 97.5843 | 95.3616 | 73.5220 | 28924 | 716 | 28927 | 1407 | 602 | 42.7861 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 94.8280 | 94.2961 | 95.3659 | 70.4398 | 777 | 47 | 782 | 38 | 27 | 71.0526 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 55.5323 | 39.1709 | 95.3662 | 55.2807 | 463 | 719 | 638 | 31 | 30 | 96.7742 | |
| ghariani-varprowl | INDEL | * | HG002complexvar | homalt | 94.5817 | 93.8099 | 95.3663 | 48.0723 | 25354 | 1673 | 25253 | 1227 | 858 | 69.9267 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 97.5725 | 99.8788 | 95.3704 | 71.6070 | 824 | 1 | 824 | 40 | 39 | 97.5000 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 97.5725 | 99.8788 | 95.3704 | 71.6070 | 824 | 1 | 824 | 40 | 39 | 97.5000 | |
| ckim-vqsr | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 97.5725 | 99.8788 | 95.3704 | 71.6070 | 824 | 1 | 824 | 40 | 39 | 97.5000 | |
| ckim-vqsr | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 97.5725 | 99.8788 | 95.3704 | 71.6070 | 824 | 1 | 824 | 40 | 39 | 97.5000 | |