PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
49851-49900 / 86044 show all | |||||||||||||||
| gduggal-snapfb | SNP | ti | map_l100_m0_e0 | het | 96.0596 | 96.8390 | 95.2927 | 67.8767 | 13541 | 442 | 13543 | 669 | 329 | 49.1779 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 51.3821 | 35.1740 | 95.2929 | 41.6005 | 930 | 1714 | 911 | 45 | 35 | 77.7778 | |
| ckim-gatk | INDEL | D6_15 | map_l150_m2_e0 | * | 97.0060 | 98.7805 | 95.2941 | 94.2138 | 81 | 1 | 81 | 4 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 60.7839 | 44.6237 | 95.2941 | 48.1707 | 83 | 103 | 81 | 4 | 4 | 100.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 97.1583 | 99.0954 | 95.2956 | 68.4624 | 3834 | 35 | 3788 | 187 | 181 | 96.7914 | |
| bgallagher-sentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 97.4911 | 99.7899 | 95.2959 | 55.3475 | 9501 | 20 | 9501 | 469 | 465 | 99.1471 | |
| gduggal-snapplat | SNP | * | map_l150_m1_e0 | * | 92.5221 | 89.9049 | 95.2961 | 83.9996 | 27519 | 3090 | 27532 | 1359 | 751 | 55.2612 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 91.6332 | 88.2406 | 95.2970 | 51.5896 | 15593 | 2078 | 16717 | 825 | 785 | 95.1515 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 91.6332 | 88.2406 | 95.2970 | 51.5896 | 15593 | 2078 | 16717 | 825 | 785 | 95.1515 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 67.6032 | 52.3810 | 95.2970 | 70.8303 | 385 | 350 | 385 | 19 | 19 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | HG002compoundhet | * | 94.6830 | 94.0760 | 95.2979 | 36.3455 | 8496 | 535 | 8492 | 419 | 416 | 99.2840 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.3574 | 99.5074 | 95.2984 | 84.1819 | 606 | 3 | 527 | 26 | 22 | 84.6154 | |
| ckim-dragen | INDEL | D1_5 | map_l125_m2_e1 | het | 96.4026 | 97.5325 | 95.2986 | 89.0022 | 751 | 19 | 750 | 37 | 3 | 8.1081 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 77.8824 | 65.8473 | 95.3008 | 85.1934 | 509 | 264 | 507 | 25 | 6 | 24.0000 | |
| jmaeng-gatk | INDEL | I6_15 | * | homalt | 97.4945 | 99.7916 | 95.3008 | 55.3726 | 6226 | 13 | 6226 | 307 | 303 | 98.6971 | |
| asubramanian-gatk | INDEL | D1_5 | map_l125_m2_e0 | * | 91.8425 | 88.6264 | 95.3008 | 90.1645 | 1013 | 130 | 1014 | 50 | 5 | 10.0000 | |
| ckim-gatk | SNP | tv | map_l250_m0_e0 | * | 61.2245 | 45.0980 | 95.3039 | 98.2741 | 345 | 420 | 345 | 17 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | map_l150_m1_e0 | * | 97.4561 | 99.7067 | 95.3048 | 77.8264 | 10880 | 32 | 10819 | 533 | 14 | 2.6266 | |
| dgrover-gatk | INDEL | * | map_l250_m2_e1 | het | 95.7547 | 96.2085 | 95.3052 | 96.8873 | 203 | 8 | 203 | 10 | 1 | 10.0000 | |
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 69.8019 | 55.0659 | 95.3064 | 79.2366 | 1462 | 1193 | 1462 | 72 | 30 | 41.6667 | |
| rpoplin-dv42 | INDEL | D16_PLUS | * | * | 94.4399 | 93.5879 | 95.3076 | 64.2354 | 6349 | 435 | 6337 | 312 | 290 | 92.9487 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.2008 | 97.1098 | 95.3086 | 72.1458 | 336 | 10 | 386 | 19 | 9 | 47.3684 | |
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 94.2145 | 93.1450 | 95.3088 | 77.7623 | 2473 | 182 | 2438 | 120 | 91 | 75.8333 | |
| gduggal-snapfb | INDEL | D1_5 | map_l125_m2_e1 | * | 96.0083 | 96.7156 | 95.3112 | 86.9753 | 1119 | 38 | 1118 | 55 | 9 | 16.3636 | |
| gduggal-bwavard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 90.9430 | 86.9565 | 95.3125 | 86.7495 | 60 | 9 | 61 | 3 | 2 | 66.6667 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 95.7313 | 96.1538 | 95.3125 | 80.8383 | 50 | 2 | 61 | 3 | 1 | 33.3333 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 91.3928 | 87.7828 | 95.3125 | 88.4128 | 194 | 27 | 183 | 9 | 1 | 11.1111 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 95.4738 | 95.6357 | 95.3125 | 79.8742 | 504 | 23 | 427 | 21 | 20 | 95.2381 | |
| jli-custom | INDEL | * | map_l250_m1_e0 | het | 95.8115 | 96.3158 | 95.3125 | 95.5556 | 183 | 7 | 183 | 9 | 2 | 22.2222 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l100_m1_e0 | * | 94.9416 | 94.5736 | 95.3125 | 85.7936 | 244 | 14 | 244 | 12 | 6 | 50.0000 | |
| ckim-vqsr | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 93.8462 | 92.4242 | 95.3125 | 93.8402 | 61 | 5 | 61 | 3 | 3 | 100.0000 | |
| gduggal-bwavard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.2853 | 97.2759 | 95.3147 | 68.9687 | 4178 | 117 | 4150 | 204 | 19 | 9.3137 | |
| jpowers-varprowl | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 96.4576 | 97.6253 | 95.3175 | 78.6292 | 1480 | 36 | 1486 | 73 | 21 | 28.7671 | |
| bgallagher-sentieon | INDEL | D16_PLUS | HG002compoundhet | * | 95.0525 | 94.7886 | 95.3179 | 35.3692 | 2219 | 122 | 2219 | 109 | 106 | 97.2477 | |
| ghariani-varprowl | SNP | tv | map_l100_m1_e0 | het | 97.2713 | 99.3060 | 95.3184 | 75.1777 | 15310 | 107 | 15311 | 752 | 97 | 12.8989 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 38.9486 | 24.4745 | 95.3216 | 91.4756 | 163 | 503 | 163 | 8 | 2 | 25.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 38.9486 | 24.4745 | 95.3216 | 91.4756 | 163 | 503 | 163 | 8 | 2 | 25.0000 | |
| ckim-gatk | INDEL | D1_5 | map_l100_m2_e0 | * | 97.0041 | 98.7467 | 95.3219 | 88.2074 | 1891 | 24 | 1895 | 93 | 8 | 8.6022 | |
| qzeng-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 96.9150 | 98.5617 | 95.3224 | 87.1181 | 6784 | 99 | 6888 | 338 | 49 | 14.4970 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 92.5568 | 89.9466 | 95.3230 | 44.4415 | 3534 | 395 | 3954 | 194 | 181 | 93.2990 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 71.3699 | 57.0370 | 95.3237 | 59.0574 | 77 | 58 | 265 | 13 | 11 | 84.6154 | |
| eyeh-varpipe | INDEL | D1_5 | map_siren | homalt | 96.9490 | 98.6301 | 95.3243 | 81.9616 | 1152 | 16 | 1264 | 62 | 47 | 75.8065 | |
| cchapple-custom | SNP | ti | map_l150_m2_e0 | het | 96.0807 | 96.8481 | 95.3254 | 81.6490 | 12475 | 406 | 12480 | 612 | 162 | 26.4706 | |
| ghariani-varprowl | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 97.1636 | 99.0725 | 95.3268 | 47.5871 | 3418 | 32 | 3427 | 168 | 33 | 19.6429 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 97.0004 | 98.7335 | 95.3271 | 68.1496 | 3820 | 49 | 3774 | 185 | 180 | 97.2973 | |
| gduggal-bwafb | SNP | ti | HG002compoundhet | het | 96.9467 | 98.6218 | 95.3275 | 45.8199 | 9374 | 131 | 9446 | 463 | 78 | 16.8467 | |
| cchapple-custom | SNP | ti | map_l250_m1_e0 | het | 95.4232 | 95.5189 | 95.3277 | 91.2575 | 2835 | 133 | 2836 | 139 | 37 | 26.6187 | |
| cchapple-custom | SNP | ti | map_l150_m2_e1 | het | 96.0905 | 96.8652 | 95.3281 | 81.7323 | 12607 | 408 | 12610 | 618 | 163 | 26.3754 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 94.3107 | 93.3144 | 95.3285 | 30.1733 | 656 | 47 | 653 | 32 | 31 | 96.8750 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 93.4954 | 91.7293 | 95.3307 | 81.1445 | 244 | 22 | 245 | 12 | 9 | 75.0000 | |