PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
49551-49600 / 86044 show all | |||||||||||||||
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 97.2427 | 99.4993 | 95.0863 | 76.1894 | 16890 | 85 | 16913 | 874 | 433 | 49.5423 | |
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 97.2427 | 99.4993 | 95.0863 | 76.1894 | 16890 | 85 | 16913 | 874 | 433 | 49.5423 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 91.8499 | 88.8266 | 95.0863 | 43.5099 | 14254 | 1793 | 14165 | 732 | 583 | 79.6448 | |
| cchapple-custom | INDEL | D1_5 | map_l125_m1_e0 | * | 96.1525 | 97.2426 | 95.0864 | 84.7784 | 1058 | 30 | 1045 | 54 | 6 | 11.1111 | |
| jlack-gatk | SNP | * | map_l100_m2_e1 | * | 97.0682 | 99.1343 | 95.0864 | 75.5739 | 74090 | 647 | 74079 | 3828 | 292 | 7.6280 | |
| gduggal-snapplat | INDEL | I1_5 | map_l125_m1_e0 | homalt | 87.6815 | 81.3456 | 95.0877 | 89.5871 | 266 | 61 | 271 | 14 | 0 | 0.0000 | |
| ckim-dragen | INDEL | * | func_cds | het | 97.2603 | 99.5327 | 95.0893 | 57.2519 | 213 | 1 | 213 | 11 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I1_5 | map_l150_m2_e1 | het | 95.0223 | 94.9527 | 95.0920 | 90.6349 | 301 | 16 | 310 | 16 | 2 | 12.5000 | |
| qzeng-custom | INDEL | * | map_l150_m0_e0 | homalt | 76.0880 | 63.4146 | 95.0920 | 93.4591 | 104 | 60 | 155 | 8 | 3 | 37.5000 | |
| ghariani-varprowl | SNP | * | map_l150_m0_e0 | * | 96.3674 | 97.6729 | 95.0963 | 84.3053 | 11752 | 280 | 11752 | 606 | 137 | 22.6073 | |
| ckim-dragen | SNP | tv | map_l250_m0_e0 | het | 95.0131 | 94.9301 | 95.0963 | 94.2428 | 543 | 29 | 543 | 28 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 93.3508 | 91.6667 | 95.0980 | 76.7654 | 99 | 9 | 97 | 5 | 4 | 80.0000 | |
| ghariani-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.2784 | 99.5607 | 95.0984 | 65.7462 | 2946 | 13 | 2949 | 152 | 10 | 6.5790 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 94.5807 | 94.0681 | 95.0990 | 73.7052 | 60609 | 3822 | 61530 | 3171 | 1742 | 54.9354 | |
| ndellapenna-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 93.2318 | 91.4352 | 95.1004 | 84.7221 | 1185 | 111 | 1184 | 61 | 36 | 59.0164 | |
| gduggal-snapplat | INDEL | * | map_siren | homalt | 83.6919 | 74.7269 | 95.1011 | 85.8909 | 1984 | 671 | 2116 | 109 | 16 | 14.6789 | |
| eyeh-varpipe | SNP | tv | map_l100_m1_e0 | * | 97.3811 | 99.7714 | 95.1026 | 69.0013 | 24445 | 56 | 24274 | 1250 | 21 | 1.6800 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 93.3376 | 91.6367 | 95.1028 | 49.5731 | 10179 | 929 | 9943 | 512 | 284 | 55.4688 | |
| cchapple-custom | INDEL | D6_15 | map_siren | het | 94.8724 | 94.6429 | 95.1031 | 81.6462 | 265 | 15 | 369 | 19 | 8 | 42.1053 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 95.2685 | 95.4338 | 95.1039 | 78.5282 | 836 | 40 | 641 | 33 | 33 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 48.0410 | 32.1373 | 95.1060 | 47.1096 | 206 | 435 | 583 | 30 | 30 | 100.0000 | |
| eyeh-varpipe | SNP | * | map_l125_m0_e0 | het | 97.2776 | 99.5499 | 95.1068 | 80.0626 | 12607 | 57 | 12245 | 630 | 17 | 2.6984 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 80.1319 | 69.2308 | 95.1076 | 60.6014 | 513 | 228 | 486 | 25 | 9 | 36.0000 | |
| ckim-vqsr | INDEL | * | map_l150_m2_e1 | het | 94.7936 | 94.4805 | 95.1087 | 94.5035 | 873 | 51 | 875 | 45 | 4 | 8.8889 | |
| gduggal-snapfb | INDEL | D1_5 | map_l125_m1_e0 | * | 95.8482 | 96.5993 | 95.1087 | 86.1498 | 1051 | 37 | 1050 | 54 | 9 | 16.6667 | |
| cchapple-custom | INDEL | * | map_l125_m2_e0 | * | 95.8417 | 96.5847 | 95.1101 | 87.3742 | 2121 | 75 | 2159 | 111 | 23 | 20.7207 | |
| gduggal-snapplat | SNP | tv | HG002compoundhet | homalt | 93.1015 | 91.1747 | 95.1114 | 51.4204 | 3089 | 299 | 3074 | 158 | 115 | 72.7848 | |
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 97.1138 | 99.2021 | 95.1115 | 61.2625 | 1119 | 9 | 1109 | 57 | 18 | 31.5789 | |
| gduggal-bwaplat | INDEL | * | HG002compoundhet | * | 80.3779 | 69.5961 | 95.1127 | 70.6361 | 20851 | 9109 | 20843 | 1071 | 677 | 63.2120 | |
| ckim-gatk | SNP | tv | map_l250_m1_e0 | het | 70.9926 | 56.6312 | 95.1128 | 96.8261 | 1012 | 775 | 1012 | 52 | 1 | 1.9231 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 94.4767 | 93.8476 | 95.1143 | 74.6842 | 2044 | 134 | 1830 | 94 | 84 | 89.3617 | |
| ckim-dragen | INDEL | * | segdup | * | 97.1040 | 99.1784 | 95.1146 | 95.2650 | 2535 | 21 | 2531 | 130 | 14 | 10.7692 | |
| gduggal-snapfb | INDEL | * | segdup | * | 93.0343 | 91.0407 | 95.1171 | 94.2770 | 2327 | 229 | 2396 | 123 | 43 | 34.9593 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 95.7862 | 96.4642 | 95.1177 | 63.6639 | 6193 | 227 | 14027 | 720 | 615 | 85.4167 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 95.7862 | 96.4642 | 95.1177 | 63.6639 | 6193 | 227 | 14027 | 720 | 615 | 85.4167 | |
| ghariani-varprowl | SNP | * | map_l150_m2_e0 | het | 96.9127 | 98.7732 | 95.1210 | 82.9549 | 19886 | 247 | 19886 | 1020 | 198 | 19.4118 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 97.4618 | 99.9203 | 95.1213 | 59.6779 | 3763 | 3 | 3763 | 193 | 190 | 98.4456 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 97.4618 | 99.9203 | 95.1213 | 59.6779 | 3763 | 3 | 3763 | 193 | 190 | 98.4456 | |
| gduggal-bwafb | INDEL | D1_5 | map_l150_m0_e0 | het | 95.8231 | 96.5347 | 95.1220 | 90.2334 | 195 | 7 | 195 | 10 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 89.6552 | 84.7826 | 95.1220 | 62.7273 | 39 | 7 | 39 | 2 | 2 | 100.0000 | |
| jlack-gatk | INDEL | * | tech_badpromoters | het | 97.5000 | 100.0000 | 95.1220 | 50.6024 | 39 | 0 | 39 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 95.1220 | 95.1220 | 95.1220 | 93.7785 | 39 | 2 | 39 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 89.2397 | 84.0426 | 95.1220 | 53.9757 | 474 | 90 | 468 | 24 | 13 | 54.1667 | |
| ckim-dragen | INDEL | D6_15 | map_l150_m1_e0 | het | 97.5000 | 100.0000 | 95.1220 | 93.8806 | 39 | 0 | 39 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 47.4332 | 31.5939 | 95.1220 | 44.9136 | 1114 | 2412 | 1092 | 56 | 43 | 76.7857 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 47.4332 | 31.5939 | 95.1220 | 44.9136 | 1114 | 2412 | 1092 | 56 | 43 | 76.7857 | |
| gduggal-snapvard | SNP | ti | tech_badpromoters | het | 91.7647 | 88.6364 | 95.1220 | 57.2917 | 39 | 5 | 39 | 2 | 1 | 50.0000 | |
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 96.3260 | 97.5610 | 95.1220 | 92.6391 | 40 | 1 | 39 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l250_m2_e0 | het | 95.9016 | 96.6942 | 95.1220 | 94.7771 | 117 | 4 | 117 | 6 | 1 | 16.6667 | |
| raldana-dualsentieon | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 95.1220 | 95.1220 | 95.1220 | 91.5638 | 39 | 2 | 39 | 2 | 1 | 50.0000 | |