PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
49451-49500 / 86044 show all | |||||||||||||||
| hfeng-pmm1 | INDEL | I6_15 | map_l150_m1_e0 | * | 84.4444 | 76.0000 | 95.0000 | 94.6237 | 19 | 6 | 19 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | map_l150_m2_e0 | * | 84.4444 | 76.0000 | 95.0000 | 95.2830 | 19 | 6 | 19 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | * | homalt | 97.3161 | 99.7471 | 95.0008 | 59.2976 | 6310 | 16 | 6309 | 332 | 329 | 99.0964 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 93.9904 | 93.0008 | 95.0013 | 54.6571 | 3654 | 275 | 3649 | 192 | 181 | 94.2708 | |
| jlack-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 97.3331 | 99.7813 | 95.0021 | 46.2479 | 11408 | 25 | 11405 | 600 | 4 | 0.6667 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 89.2536 | 84.1610 | 95.0022 | 64.8333 | 2237 | 421 | 2205 | 116 | 101 | 87.0690 | |
| cchapple-custom | INDEL | * | map_l125_m1_e0 | * | 95.7860 | 96.5828 | 95.0023 | 86.4180 | 2035 | 72 | 2072 | 109 | 23 | 21.1009 | |
| jmaeng-gatk | SNP | tv | map_l250_m2_e1 | het | 72.8186 | 59.0331 | 95.0041 | 96.9764 | 1160 | 805 | 1160 | 61 | 1 | 1.6393 | |
| gduggal-snapfb | SNP | ti | map_l150_m2_e0 | het | 95.8374 | 96.6850 | 95.0046 | 76.3778 | 12454 | 427 | 12457 | 655 | 335 | 51.1450 | |
| asubramanian-gatk | INDEL | I6_15 | HG002compoundhet | * | 93.0480 | 91.1691 | 95.0059 | 37.8731 | 8001 | 775 | 8009 | 421 | 405 | 96.1995 | |
| jpowers-varprowl | INDEL | I1_5 | map_l100_m1_e0 | het | 94.1526 | 93.3076 | 95.0131 | 86.3196 | 725 | 52 | 724 | 38 | 26 | 68.4211 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 78.3552 | 66.6667 | 95.0139 | 97.4690 | 2 | 1 | 343 | 18 | 1 | 5.5556 | |
| cchapple-custom | SNP | tv | map_l150_m0_e0 | * | 95.4922 | 95.9751 | 95.0142 | 82.7299 | 4006 | 168 | 4002 | 210 | 43 | 20.4762 | |
| mlin-fermikit | SNP | ti | map_siren | * | 84.2869 | 75.7361 | 95.0143 | 45.5372 | 76005 | 24350 | 76001 | 3988 | 3501 | 87.7884 | |
| gduggal-bwafb | SNP | * | HG002compoundhet | het | 96.7961 | 98.6458 | 95.0145 | 51.0584 | 13986 | 192 | 14103 | 740 | 130 | 17.5676 | |
| gduggal-snapfb | SNP | ti | map_l150_m2_e1 | het | 95.8577 | 96.7115 | 95.0189 | 76.5004 | 12587 | 428 | 12590 | 660 | 337 | 51.0606 | |
| gduggal-snapfb | INDEL | I1_5 | map_l150_m2_e0 | * | 95.3887 | 95.7611 | 95.0192 | 91.2077 | 497 | 22 | 496 | 26 | 7 | 26.9231 | |
| jlack-gatk | SNP | * | map_l100_m1_e0 | * | 97.0238 | 99.1147 | 95.0193 | 74.0812 | 71762 | 641 | 71751 | 3761 | 290 | 7.7107 | |
| ciseli-custom | SNP | * | func_cds | het | 97.0747 | 99.2205 | 95.0198 | 27.5142 | 11074 | 87 | 11047 | 579 | 4 | 0.6908 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 60.8995 | 44.8091 | 95.0199 | 66.3989 | 669 | 824 | 954 | 50 | 47 | 94.0000 | |
| qzeng-custom | INDEL | * | func_cds | homalt | 97.2362 | 99.5575 | 95.0207 | 31.7280 | 225 | 1 | 229 | 12 | 2 | 16.6667 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 93.6455 | 92.3077 | 95.0226 | 80.9154 | 228 | 19 | 210 | 11 | 9 | 81.8182 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 88.7545 | 83.2610 | 95.0242 | 30.5643 | 1343 | 270 | 6092 | 319 | 295 | 92.4765 | |
| ckim-vqsr | INDEL | * | map_l150_m2_e0 | het | 94.8645 | 94.7020 | 95.0276 | 94.4740 | 858 | 48 | 860 | 45 | 4 | 8.8889 | |
| jmaeng-gatk | INDEL | I1_5 | map_l150_m0_e0 | * | 96.0815 | 97.1591 | 95.0276 | 94.8594 | 171 | 5 | 172 | 9 | 2 | 22.2222 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 93.7823 | 92.5681 | 95.0288 | 54.7425 | 3637 | 292 | 3632 | 190 | 179 | 94.2105 | |
| gduggal-snapfb | SNP | tv | map_l125_m0_e0 | * | 95.3719 | 95.7171 | 95.0292 | 79.3444 | 6347 | 284 | 6347 | 332 | 129 | 38.8554 | |
| bgallagher-sentieon | INDEL | * | map_l250_m2_e1 | * | 96.2963 | 97.5976 | 95.0292 | 96.2426 | 325 | 8 | 325 | 17 | 4 | 23.5294 | |
| eyeh-varpipe | INDEL | D16_PLUS | HG002compoundhet | hetalt | 28.4846 | 16.7531 | 95.0298 | 30.9066 | 323 | 1605 | 478 | 25 | 25 | 100.0000 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.0434 | 93.0771 | 95.0299 | 54.7829 | 3657 | 272 | 3652 | 191 | 179 | 93.7173 | |
| jmaeng-gatk | INDEL | I1_5 | map_l125_m0_e0 | * | 96.6800 | 98.3871 | 95.0311 | 92.5047 | 305 | 5 | 306 | 16 | 2 | 12.5000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 95.5611 | 96.0968 | 95.0314 | 82.9837 | 1748 | 71 | 1511 | 79 | 62 | 78.4810 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 95.5611 | 96.0968 | 95.0314 | 82.9837 | 1748 | 71 | 1511 | 79 | 62 | 78.4810 | |
| ghariani-varprowl | SNP | * | map_l150_m1_e0 | het | 96.8491 | 98.7368 | 95.0321 | 81.8341 | 19072 | 244 | 19072 | 997 | 197 | 19.7593 | |
| ckim-dragen | INDEL | I1_5 | map_l150_m2_e0 | het | 93.7785 | 92.5566 | 95.0331 | 91.9659 | 286 | 23 | 287 | 15 | 2 | 13.3333 | |
| gduggal-snapfb | INDEL | D1_5 | HG002complexvar | * | 94.7329 | 94.4337 | 95.0340 | 57.1180 | 30894 | 1821 | 31423 | 1642 | 692 | 42.1437 | |
| eyeh-varpipe | INDEL | * | HG002complexvar | * | 93.6611 | 92.3263 | 95.0350 | 54.2841 | 71034 | 5904 | 71760 | 3749 | 3600 | 96.0256 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 77.5746 | 65.5340 | 95.0355 | 74.5946 | 135 | 71 | 134 | 7 | 5 | 71.4286 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 97.3094 | 99.6937 | 95.0365 | 73.7548 | 651 | 2 | 651 | 34 | 34 | 100.0000 | |
| gduggal-snapfb | INDEL | * | HG002complexvar | homalt | 93.4910 | 91.9932 | 95.0384 | 54.0929 | 24863 | 2164 | 24901 | 1300 | 829 | 63.7692 | |
| asubramanian-gatk | INDEL | D1_5 | map_l100_m2_e1 | het | 91.0922 | 87.4606 | 95.0385 | 88.5235 | 1109 | 159 | 1111 | 58 | 6 | 10.3448 | |
| ckim-dragen | INDEL | * | map_l125_m2_e0 | het | 95.7173 | 96.4055 | 95.0390 | 90.2021 | 1341 | 50 | 1341 | 70 | 7 | 10.0000 | |
| ckim-gatk | INDEL | I1_5 | map_l125_m1_e0 | het | 96.5689 | 98.1481 | 95.0397 | 91.4793 | 477 | 9 | 479 | 25 | 1 | 4.0000 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 92.6984 | 90.4665 | 95.0431 | 49.8920 | 446 | 47 | 441 | 23 | 12 | 52.1739 | |
| astatham-gatk | INDEL | * | map_l150_m0_e0 | het | 95.0292 | 95.0147 | 95.0437 | 93.4915 | 324 | 17 | 326 | 17 | 1 | 5.8824 | |
| gduggal-snapfb | SNP | ti | map_l250_m2_e1 | * | 94.5649 | 94.0898 | 95.0448 | 89.7593 | 4776 | 300 | 4776 | 249 | 130 | 52.2088 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 90.9017 | 87.1048 | 95.0448 | 58.1886 | 1405 | 208 | 2014 | 105 | 83 | 79.0476 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.9984 | 96.9697 | 95.0464 | 75.6777 | 320 | 10 | 307 | 16 | 12 | 75.0000 | |
| jpowers-varprowl | SNP | * | map_l250_m1_e0 | * | 94.8303 | 94.6137 | 95.0480 | 91.2876 | 6833 | 389 | 6833 | 356 | 90 | 25.2809 | |
| ltrigg-rtg1 | INDEL | I6_15 | HG002compoundhet | het | 94.6384 | 94.2308 | 95.0495 | 73.6292 | 196 | 12 | 192 | 10 | 6 | 60.0000 | |