PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
49401-49450 / 86044 show all | |||||||||||||||
| jpowers-varprowl | INDEL | D6_15 | map_l250_m2_e1 | * | 90.4762 | 86.3636 | 95.0000 | 96.4349 | 19 | 3 | 19 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C6_15 | HG002compoundhet | het | 0.0000 | 0.0000 | 95.0000 | 88.0952 | 0 | 0 | 19 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 87.7230 | 81.4815 | 95.0000 | 92.0635 | 22 | 5 | 19 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | segdup | homalt | 97.4359 | 100.0000 | 95.0000 | 94.7781 | 19 | 0 | 19 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 92.4324 | 90.0000 | 95.0000 | 99.2404 | 18 | 2 | 19 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 92.4324 | 90.0000 | 95.0000 | 99.2424 | 18 | 2 | 19 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | C6_15 | HG002compoundhet | het | 0.0000 | 0.0000 | 95.0000 | 88.3041 | 0 | 0 | 19 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l100_m1_e0 | het | 91.9717 | 89.1304 | 95.0000 | 84.6743 | 41 | 5 | 38 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | D6_15 | map_l100_m0_e0 | * | 93.0936 | 91.2621 | 95.0000 | 91.5896 | 94 | 9 | 95 | 5 | 1 | 20.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | map_siren | homalt | 92.6829 | 90.4762 | 95.0000 | 95.0249 | 19 | 2 | 19 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | * | map_l250_m2_e0 | * | 96.2742 | 97.5831 | 95.0000 | 96.1621 | 323 | 8 | 323 | 17 | 4 | 23.5294 | |
| asubramanian-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 89.7542 | 85.0575 | 95.0000 | 99.9024 | 74 | 13 | 76 | 4 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | segdup | homalt | 97.4359 | 100.0000 | 95.0000 | 94.6237 | 19 | 0 | 19 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 90.1186 | 85.7143 | 95.0000 | 99.9602 | 18 | 3 | 19 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 92.6829 | 90.4762 | 95.0000 | 99.3670 | 38 | 4 | 38 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I16_PLUS | segdup | homalt | 97.4359 | 100.0000 | 95.0000 | 94.6809 | 19 | 0 | 19 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | segdup | homalt | 97.4359 | 100.0000 | 95.0000 | 94.7917 | 19 | 0 | 19 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I6_15 | map_l100_m1_e0 | het | 95.7983 | 96.6102 | 95.0000 | 91.2152 | 57 | 2 | 57 | 3 | 1 | 33.3333 | |
| ciseli-custom | SNP | ti | tech_badpromoters | homalt | 95.0609 | 95.1220 | 95.0000 | 49.3671 | 39 | 2 | 38 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | D6_15 | map_l150_m2_e0 | het | 96.3923 | 97.8261 | 95.0000 | 91.5730 | 45 | 1 | 57 | 3 | 1 | 33.3333 | |
| ckim-gatk | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 95.0000 | 95.0000 | 95.0000 | 99.3932 | 19 | 1 | 19 | 1 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 58.4615 | 42.2222 | 95.0000 | 72.9730 | 19 | 26 | 19 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l250_m1_e0 | het | 47.5000 | 31.6667 | 95.0000 | 92.8826 | 19 | 41 | 19 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D1_5 | map_l150_m2_e0 | het | 84.9655 | 76.8482 | 95.0000 | 94.5186 | 395 | 119 | 437 | 23 | 19 | 82.6087 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 87.7230 | 81.4815 | 95.0000 | 91.0714 | 22 | 5 | 19 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | segdup | homalt | 97.4359 | 100.0000 | 95.0000 | 93.2432 | 19 | 0 | 19 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l150_m1_e0 | * | 84.4444 | 76.0000 | 95.0000 | 93.2432 | 19 | 6 | 19 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l150_m2_e0 | * | 84.4444 | 76.0000 | 95.0000 | 94.0299 | 19 | 6 | 19 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 95.5612 | 96.1290 | 95.0000 | 81.4600 | 149 | 6 | 152 | 8 | 7 | 87.5000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.4359 | 100.0000 | 95.0000 | 83.9034 | 74 | 0 | 76 | 4 | 4 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 95.8529 | 96.7213 | 95.0000 | 65.6652 | 59 | 2 | 76 | 4 | 3 | 75.0000 | |
| eyeh-varpipe | INDEL | I1_5 | decoy | * | 0.0000 | 0.0000 | 95.0000 | 99.6164 | 0 | 0 | 19 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 85.5305 | 77.7778 | 95.0000 | 91.5966 | 7 | 2 | 19 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | SNP | tv | map_l250_m2_e0 | hetalt | 97.4359 | 100.0000 | 95.0000 | 87.7301 | 5 | 0 | 19 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | map_l250_m2_e1 | hetalt | 97.4359 | 100.0000 | 95.0000 | 88.0952 | 5 | 0 | 19 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l150_m0_e0 | het | 77.1875 | 65.0000 | 95.0000 | 85.9155 | 13 | 7 | 19 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | segdup | hetalt | 92.2122 | 89.5833 | 95.0000 | 97.6771 | 43 | 5 | 19 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_l150_m1_e0 | * | 84.4444 | 76.0000 | 95.0000 | 91.4530 | 19 | 6 | 19 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_l150_m2_e0 | * | 84.4444 | 76.0000 | 95.0000 | 92.6740 | 19 | 6 | 19 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_siren | homalt | 70.3704 | 55.8824 | 95.0000 | 90.0990 | 19 | 15 | 19 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 60.5578 | 44.4444 | 95.0000 | 68.2540 | 20 | 25 | 19 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 42.0664 | 27.0142 | 95.0000 | 71.0145 | 57 | 154 | 57 | 3 | 3 | 100.0000 | |
| gduggal-bwavard | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 66.7317 | 51.4286 | 95.0000 | 93.4641 | 18 | 17 | 19 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | segdup | het | 87.4904 | 81.0811 | 95.0000 | 89.3899 | 30 | 7 | 38 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | I16_PLUS | segdup | homalt | 97.4359 | 100.0000 | 95.0000 | 92.3954 | 19 | 0 | 19 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | segdup | homalt | 97.4359 | 100.0000 | 95.0000 | 94.1003 | 19 | 0 | 19 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | * | map_l150_m1_e0 | hetalt | 92.6829 | 90.4762 | 95.0000 | 95.2830 | 19 | 2 | 19 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | * | map_l150_m2_e0 | hetalt | 92.6829 | 90.4762 | 95.0000 | 95.8506 | 19 | 2 | 19 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | segdup | homalt | 97.4359 | 100.0000 | 95.0000 | 93.9024 | 19 | 0 | 19 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 95.0000 | 95.0000 | 95.0000 | 99.3115 | 19 | 1 | 19 | 1 | 0 | 0.0000 | |