PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
49251-49300 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 91.3580 | 88.0952 | 94.8718 | 99.3893 | 37 | 5 | 37 | 2 | 0 | 0.0000 | |
| ciseli-custom | SNP | tv | tech_badpromoters | homalt | 96.1368 | 97.4359 | 94.8718 | 56.1798 | 38 | 1 | 37 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D6_15 | map_l125_m0_e0 | het | 95.7044 | 96.5517 | 94.8718 | 91.7021 | 28 | 1 | 37 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D6_15 | map_l150_m1_e0 | * | 94.6958 | 94.5205 | 94.8718 | 90.3822 | 69 | 4 | 74 | 4 | 2 | 50.0000 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 92.5726 | 90.3810 | 94.8730 | 43.3628 | 1945 | 207 | 1943 | 105 | 74 | 70.4762 | |
| egarrison-hhga | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 95.5455 | 96.2248 | 94.8757 | 43.8826 | 9966 | 391 | 9961 | 538 | 202 | 37.5465 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 94.5739 | 94.2717 | 94.8781 | 48.0950 | 3456 | 210 | 3464 | 187 | 150 | 80.2139 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 73.3411 | 59.7723 | 94.8795 | 89.6250 | 315 | 212 | 315 | 17 | 16 | 94.1176 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 97.0821 | 99.3893 | 94.8796 | 55.1755 | 3743 | 23 | 3743 | 202 | 199 | 98.5149 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 97.0821 | 99.3893 | 94.8796 | 55.1755 | 3743 | 23 | 3743 | 202 | 199 | 98.5149 | |
| gduggal-snapplat | SNP | tv | map_l150_m2_e1 | * | 92.0738 | 89.4279 | 94.8810 | 86.0143 | 10286 | 1216 | 10287 | 555 | 293 | 52.7928 | |
| gduggal-snapfb | INDEL | D1_5 | HG002complexvar | het | 94.7486 | 94.6159 | 94.8816 | 54.6441 | 19647 | 1118 | 20632 | 1113 | 329 | 29.5597 | |
| asubramanian-gatk | INDEL | I1_5 | map_l150_m2_e1 | het | 84.0230 | 75.3943 | 94.8819 | 94.3278 | 239 | 78 | 241 | 13 | 1 | 7.6923 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 97.1035 | 99.4307 | 94.8827 | 83.0011 | 524 | 3 | 445 | 24 | 24 | 100.0000 | |
| hfeng-pmm3 | INDEL | * | map_l250_m2_e0 | het | 96.0000 | 97.1429 | 94.8837 | 95.4908 | 204 | 6 | 204 | 11 | 2 | 18.1818 | |
| gduggal-bwaplat | INDEL | D1_5 | HG002complexvar | hetalt | 80.5939 | 70.0444 | 94.8847 | 81.8132 | 947 | 405 | 946 | 51 | 50 | 98.0392 | |
| jpowers-varprowl | INDEL | D1_5 | map_l100_m1_e0 | * | 93.6112 | 92.3701 | 94.8860 | 83.6796 | 1707 | 141 | 1707 | 92 | 63 | 68.4783 | |
| ndellapenna-hhga | INDEL | D6_15 | segdup | * | 90.7237 | 86.9110 | 94.8864 | 93.3635 | 166 | 25 | 167 | 9 | 7 | 77.7778 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 91.3416 | 88.0522 | 94.8864 | 61.9636 | 3508 | 476 | 3507 | 189 | 176 | 93.1217 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 78.8211 | 67.4076 | 94.8874 | 32.5021 | 2608 | 1261 | 7628 | 411 | 399 | 97.0803 | |
| ckim-dragen | INDEL | I6_15 | HG002compoundhet | * | 93.2228 | 91.6135 | 94.8896 | 36.8488 | 8040 | 736 | 8040 | 433 | 432 | 99.7691 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 95.2513 | 95.6140 | 94.8913 | 62.4643 | 872 | 40 | 873 | 47 | 32 | 68.0851 | |
| cchapple-custom | SNP | ti | map_l150_m0_e0 | het | 95.1985 | 95.5072 | 94.8918 | 84.4938 | 4868 | 229 | 4867 | 262 | 76 | 29.0076 | |
| gduggal-snapfb | INDEL | I1_5 | map_l150_m1_e0 | * | 95.2705 | 95.6522 | 94.8919 | 90.2115 | 484 | 22 | 483 | 26 | 7 | 26.9231 | |
| ckim-dragen | SNP | ti | map_l250_m0_e0 | het | 95.1974 | 95.5032 | 94.8936 | 94.2165 | 892 | 42 | 892 | 48 | 1 | 2.0833 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 92.9148 | 91.0141 | 94.8966 | 61.7747 | 3626 | 358 | 3626 | 195 | 169 | 86.6667 | |
| eyeh-varpipe | INDEL | * | segdup | * | 93.9572 | 93.0360 | 94.8968 | 96.9158 | 2378 | 178 | 2529 | 136 | 123 | 90.4412 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 0.0000 | 94.8980 | 93.3514 | 0 | 0 | 93 | 5 | 5 | 100.0000 | |
| jli-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 93.4673 | 92.0792 | 94.8980 | 93.3106 | 93 | 8 | 93 | 5 | 3 | 60.0000 | |
| ckim-isaac | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 94.7847 | 94.6676 | 94.9020 | 63.1937 | 45697 | 2574 | 44659 | 2399 | 1704 | 71.0296 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.9940 | 99.1803 | 94.9020 | 71.6981 | 484 | 4 | 484 | 26 | 22 | 84.6154 | |
| eyeh-varpipe | INDEL | C1_5 | HG002complexvar | * | 90.0749 | 85.7143 | 94.9030 | 78.7246 | 6 | 1 | 2495 | 134 | 108 | 80.5970 | |
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 97.1915 | 99.5930 | 94.9031 | 45.9580 | 18109 | 74 | 17428 | 936 | 71 | 7.5855 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 69.0451 | 54.2606 | 94.9038 | 89.2027 | 987 | 832 | 987 | 53 | 38 | 71.6981 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 69.0451 | 54.2606 | 94.9038 | 89.2027 | 987 | 832 | 987 | 53 | 38 | 71.6981 | |
| hfeng-pmm3 | INDEL | * | map_l250_m2_e1 | het | 96.0187 | 97.1564 | 94.9074 | 95.5891 | 205 | 6 | 205 | 11 | 2 | 18.1818 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 97.3872 | 100.0000 | 94.9074 | 87.3684 | 205 | 0 | 205 | 11 | 10 | 90.9091 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 97.3872 | 100.0000 | 94.9074 | 87.3684 | 205 | 0 | 205 | 11 | 10 | 90.9091 | |
| ghariani-varprowl | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 97.2067 | 99.6183 | 94.9091 | 73.8841 | 522 | 2 | 522 | 28 | 19 | 67.8571 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 26.8433 | 15.6323 | 94.9091 | 54.3189 | 267 | 1441 | 261 | 14 | 10 | 71.4286 | |
| jmaeng-gatk | INDEL | * | HG002compoundhet | * | 93.6190 | 92.3632 | 94.9094 | 62.9257 | 27672 | 2288 | 27556 | 1478 | 1464 | 99.0528 | |
| gduggal-snapfb | INDEL | D1_5 | map_l100_m1_e0 | het | 95.6711 | 96.4433 | 94.9111 | 81.1539 | 1166 | 43 | 1175 | 63 | 7 | 11.1111 | |
| gduggal-snapfb | INDEL | D1_5 | map_l100_m2_e1 | het | 95.6362 | 96.3722 | 94.9113 | 82.2863 | 1222 | 46 | 1231 | 66 | 8 | 12.1212 | |
| mlin-fermikit | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.8184 | 94.7230 | 94.9141 | 71.6532 | 1436 | 80 | 1437 | 77 | 43 | 55.8442 | |
| gduggal-snapvard | SNP | tv | map_siren | * | 95.8840 | 96.8735 | 94.9146 | 68.0322 | 44494 | 1436 | 44271 | 2372 | 211 | 8.8955 | |
| gduggal-snapfb | SNP | ti | map_siren | hetalt | 96.5517 | 98.2456 | 94.9153 | 82.4405 | 56 | 1 | 56 | 3 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 96.5155 | 98.1707 | 94.9153 | 85.9857 | 161 | 3 | 112 | 6 | 6 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.7552 | 96.6102 | 94.9153 | 68.6170 | 57 | 2 | 56 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | D1_5 | map_l250_m2_e0 | * | 93.0748 | 91.3043 | 94.9153 | 95.7686 | 168 | 16 | 168 | 9 | 4 | 44.4444 | |
| jpowers-varprowl | INDEL | D1_5 | map_l250_m2_e1 | het | 93.3333 | 91.8033 | 94.9153 | 96.5547 | 112 | 10 | 112 | 6 | 3 | 50.0000 | |