PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
48401-48450 / 86044 show all | |||||||||||||||
| jli-custom | INDEL | D16_PLUS | map_l100_m0_e0 | het | 91.7369 | 89.4737 | 94.1176 | 95.4667 | 17 | 2 | 16 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 96.9697 | 100.0000 | 94.1176 | 78.2051 | 16 | 0 | 16 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 96.9697 | 100.0000 | 94.1176 | 80.2326 | 16 | 0 | 16 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 88.8889 | 84.2105 | 94.1176 | 82.2917 | 16 | 3 | 16 | 1 | 0 | 0.0000 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 75.6674 | 63.2653 | 94.1176 | 80.8989 | 31 | 18 | 32 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 91.0816 | 88.2353 | 94.1176 | 99.3388 | 15 | 2 | 16 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 94.1176 | 95.7393 | 0 | 0 | 16 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l150_m2_e0 | * | 94.1176 | 94.1176 | 94.1176 | 90.5556 | 16 | 1 | 16 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l150_m2_e1 | * | 91.4286 | 88.8889 | 94.1176 | 90.7609 | 16 | 2 | 16 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l100_m1_e0 | * | 79.7784 | 69.2308 | 94.1176 | 78.4810 | 18 | 8 | 16 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l100_m2_e0 | * | 79.7784 | 69.2308 | 94.1176 | 81.1111 | 18 | 8 | 16 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l100_m2_e1 | * | 79.7784 | 69.2308 | 94.1176 | 81.1111 | 18 | 8 | 16 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 92.3454 | 90.6386 | 94.1176 | 50.5132 | 2498 | 258 | 2496 | 156 | 154 | 98.7179 | |
| jmaeng-gatk | INDEL | D6_15 | map_l150_m0_e0 | * | 96.9697 | 100.0000 | 94.1176 | 95.5204 | 32 | 0 | 32 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 96.9697 | 100.0000 | 94.1176 | 83.1683 | 16 | 0 | 16 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l125_m1_e0 | het | 89.3268 | 85.0000 | 94.1176 | 88.2759 | 17 | 3 | 16 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l125_m2_e0 | het | 89.3268 | 85.0000 | 94.1176 | 89.7590 | 17 | 3 | 16 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l125_m2_e1 | het | 89.3268 | 85.0000 | 94.1176 | 89.8810 | 17 | 3 | 16 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 75.4508 | 62.9630 | 94.1176 | 80.2326 | 17 | 10 | 16 | 1 | 0 | 0.0000 | |
| jli-custom | SNP | * | map_l100_m0_e0 | hetalt | 96.9697 | 100.0000 | 94.1176 | 71.1864 | 16 | 0 | 16 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | tv | map_l100_m0_e0 | hetalt | 96.9697 | 100.0000 | 94.1176 | 71.1864 | 16 | 0 | 16 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 91.0816 | 88.2353 | 94.1176 | 99.3441 | 15 | 2 | 16 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 94.1176 | 95.6522 | 0 | 0 | 16 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I16_PLUS | map_l100_m1_e0 | het | 91.4286 | 88.8889 | 94.1176 | 94.5860 | 16 | 2 | 16 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | C16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 94.1176 | 97.3228 | 0 | 0 | 16 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 96.9697 | 100.0000 | 94.1176 | 87.7990 | 52 | 0 | 48 | 3 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 96.9697 | 100.0000 | 94.1176 | 86.7188 | 52 | 0 | 48 | 3 | 0 | 0.0000 | |
| astatham-gatk | INDEL | * | map_l250_m2_e0 | * | 95.3800 | 96.6767 | 94.1176 | 96.2801 | 320 | 11 | 320 | 20 | 4 | 20.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 96.9697 | 100.0000 | 94.1176 | 83.9623 | 16 | 0 | 16 | 1 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 75.6674 | 63.2653 | 94.1176 | 81.0056 | 31 | 18 | 32 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | SNP | * | tech_badpromoters | homalt | 96.9697 | 100.0000 | 94.1176 | 62.7193 | 80 | 0 | 80 | 5 | 1 | 20.0000 | |
| mlin-fermikit | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.6638 | 99.3464 | 94.1222 | 70.3644 | 1216 | 8 | 1217 | 76 | 58 | 76.3158 | |
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 73.3800 | 60.1280 | 94.1249 | 85.4676 | 18327 | 12153 | 18328 | 1144 | 321 | 28.0594 | |
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 73.3800 | 60.1280 | 94.1249 | 85.4676 | 18327 | 12153 | 18328 | 1144 | 321 | 28.0594 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 95.5262 | 96.9639 | 94.1304 | 83.3091 | 511 | 16 | 433 | 27 | 27 | 100.0000 | |
| qzeng-custom | SNP | * | map_l150_m0_e0 | * | 75.4274 | 62.9239 | 94.1324 | 92.2685 | 7571 | 4461 | 7492 | 467 | 396 | 84.7966 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 86.6885 | 80.3324 | 94.1368 | 55.4427 | 290 | 71 | 289 | 18 | 5 | 27.7778 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 93.0513 | 91.9890 | 94.1385 | 58.2808 | 333 | 29 | 1060 | 66 | 64 | 96.9697 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 96.6165 | 99.2278 | 94.1392 | 60.2041 | 257 | 2 | 257 | 16 | 15 | 93.7500 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 96.6165 | 99.2278 | 94.1392 | 60.2041 | 257 | 2 | 257 | 16 | 15 | 93.7500 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 84.4285 | 76.5337 | 94.1394 | 56.8627 | 4067 | 1247 | 4080 | 254 | 153 | 60.2362 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 38.1941 | 23.9567 | 94.1423 | 64.6972 | 310 | 984 | 450 | 28 | 28 | 100.0000 | |
| ghariani-varprowl | SNP | ti | map_l150_m0_e0 | het | 96.0700 | 98.0773 | 94.1431 | 85.9691 | 4999 | 98 | 4999 | 311 | 79 | 25.4019 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 91.4168 | 88.8435 | 94.1435 | 54.4059 | 653 | 82 | 643 | 40 | 39 | 97.5000 | |
| gduggal-bwavard | INDEL | I1_5 | map_l100_m2_e0 | * | 93.9648 | 93.7865 | 94.1438 | 86.6818 | 1283 | 85 | 1270 | 79 | 38 | 48.1013 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 65.7233 | 50.4831 | 94.1441 | 78.8168 | 209 | 205 | 209 | 13 | 8 | 61.5385 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 81.2213 | 71.4171 | 94.1457 | 64.2321 | 5322 | 2130 | 5339 | 332 | 30 | 9.0361 | |
| jmaeng-gatk | INDEL | D1_5 | map_l125_m2_e0 | * | 96.1968 | 98.3377 | 94.1472 | 90.8640 | 1124 | 19 | 1126 | 70 | 6 | 8.5714 | |
| ckim-dragen | INDEL | D1_5 | map_l250_m2_e0 | * | 95.4265 | 96.7391 | 94.1489 | 95.7629 | 178 | 6 | 177 | 11 | 2 | 18.1818 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 94.8741 | 95.6080 | 94.1515 | 50.7143 | 2351 | 108 | 9160 | 569 | 536 | 94.2004 | |