PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
48101-48150 / 86044 show all | |||||||||||||||
| gduggal-snapfb | INDEL | D6_15 | HG002complexvar | het | 75.2635 | 62.8205 | 93.8532 | 43.4007 | 1960 | 1160 | 2443 | 160 | 143 | 89.3750 | |
| bgallagher-sentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 93.1903 | 92.5366 | 93.8532 | 64.0267 | 5629 | 454 | 5512 | 361 | 345 | 95.5679 | |
| astatham-gatk | INDEL | D1_5 | map_l250_m1_e0 | * | 96.0000 | 98.2456 | 93.8547 | 95.4775 | 168 | 3 | 168 | 11 | 1 | 9.0909 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 95.2665 | 96.7213 | 93.8547 | 65.6430 | 118 | 4 | 168 | 11 | 1 | 9.0909 | |
| eyeh-varpipe | INDEL | * | map_l100_m2_e0 | homalt | 95.0097 | 96.1935 | 93.8547 | 84.5593 | 1213 | 48 | 1848 | 121 | 108 | 89.2562 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 78.4796 | 67.4314 | 93.8575 | 34.5759 | 2998 | 1448 | 8022 | 525 | 510 | 97.1429 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 95.9082 | 98.0492 | 93.8587 | 69.1405 | 3468 | 69 | 3454 | 226 | 220 | 97.3451 | |
| ciseli-custom | INDEL | I1_5 | func_cds | homalt | 91.8455 | 89.9160 | 93.8596 | 19.1489 | 107 | 12 | 107 | 7 | 6 | 85.7143 | |
| gduggal-snapplat | SNP | * | map_l250_m2_e0 | * | 87.8865 | 82.6252 | 93.8634 | 93.9104 | 6515 | 1370 | 6516 | 426 | 206 | 48.3568 | |
| gduggal-snapvard | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 95.2056 | 96.5856 | 93.8645 | 49.5961 | 2065 | 73 | 2050 | 134 | 7 | 5.2239 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 96.8354 | 100.0000 | 93.8650 | 76.7806 | 153 | 0 | 153 | 10 | 9 | 90.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 96.3699 | 99.0104 | 93.8665 | 85.7412 | 1801 | 18 | 1561 | 102 | 70 | 68.6275 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 96.3699 | 99.0104 | 93.8665 | 85.7412 | 1801 | 18 | 1561 | 102 | 70 | 68.6275 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 87.6652 | 82.2314 | 93.8679 | 58.9147 | 199 | 43 | 199 | 13 | 3 | 23.0769 | |
| ckim-dragen | INDEL | * | HG002compoundhet | * | 93.6532 | 93.4379 | 93.8696 | 62.4863 | 27994 | 1966 | 27868 | 1820 | 1806 | 99.2308 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 96.2180 | 98.6853 | 93.8711 | 58.0279 | 16213 | 216 | 34875 | 2277 | 1868 | 82.0378 | |
| gduggal-bwavard | INDEL | I1_5 | HG002complexvar | * | 92.2209 | 90.6273 | 93.8716 | 50.7362 | 30236 | 3127 | 29241 | 1909 | 1668 | 87.3756 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 95.2238 | 96.6140 | 93.8731 | 40.3394 | 428 | 15 | 429 | 28 | 27 | 96.4286 | |
| gduggal-snapplat | SNP | * | map_l250_m2_e1 | * | 87.9173 | 82.6718 | 93.8735 | 93.9495 | 6603 | 1384 | 6604 | 431 | 208 | 48.2599 | |
| jli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 87.1637 | 81.3486 | 93.8742 | 45.8781 | 567 | 130 | 567 | 37 | 37 | 100.0000 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 94.0231 | 94.1723 | 93.8743 | 38.5973 | 1519 | 94 | 8260 | 539 | 525 | 97.4026 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 95.4979 | 97.1751 | 93.8776 | 69.0657 | 172 | 5 | 230 | 15 | 1 | 6.6667 | |
| ndellapenna-hhga | INDEL | * | map_l100_m2_e1 | hetalt | 83.8498 | 75.7576 | 93.8776 | 89.0990 | 100 | 32 | 92 | 6 | 2 | 33.3333 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l125_m0_e0 | * | 93.7471 | 93.6170 | 93.8776 | 92.2713 | 44 | 3 | 46 | 3 | 1 | 33.3333 | |
| ghariani-varprowl | SNP | * | map_l250_m2_e0 | * | 95.6186 | 97.4255 | 93.8776 | 91.4090 | 7682 | 203 | 7682 | 501 | 87 | 17.3653 | |
| gduggal-snapfb | INDEL | D1_5 | map_l150_m0_e0 | * | 94.5123 | 95.1557 | 93.8776 | 90.9427 | 275 | 14 | 276 | 18 | 5 | 27.7778 | |
| ckim-gatk | INDEL | D6_15 | map_l125_m0_e0 | * | 95.8333 | 97.8723 | 93.8776 | 94.8038 | 46 | 1 | 46 | 3 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D6_15 | map_l125_m2_e0 | het | 94.8166 | 95.7746 | 93.8776 | 89.0503 | 68 | 3 | 92 | 6 | 2 | 33.3333 | |
| cchapple-custom | INDEL | D6_15 | map_l125_m2_e1 | het | 94.8166 | 95.7746 | 93.8776 | 89.3013 | 68 | 3 | 92 | 6 | 2 | 33.3333 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 93.7471 | 93.6170 | 93.8776 | 80.9339 | 44 | 3 | 46 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | INDEL | I1_5 | map_l100_m0_e0 | het | 95.9708 | 98.1595 | 93.8776 | 91.6586 | 320 | 6 | 322 | 21 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I1_5 | map_l250_m2_e1 | homalt | 96.8421 | 100.0000 | 93.8776 | 94.8905 | 46 | 0 | 46 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l250_m0_e0 | * | 96.8421 | 100.0000 | 93.8776 | 96.7463 | 46 | 0 | 46 | 3 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 86.1870 | 79.6610 | 93.8776 | 52.8846 | 47 | 12 | 46 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 93.8776 | 96.1448 | 0 | 0 | 46 | 3 | 1 | 33.3333 | |
| ckim-vqsr | INDEL | D6_15 | map_l150_m2_e1 | het | 95.8333 | 97.8723 | 93.8776 | 95.5616 | 46 | 1 | 46 | 3 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | * | map_l100_m0_e0 | * | 95.8731 | 97.9527 | 93.8800 | 90.3027 | 1531 | 32 | 1534 | 100 | 9 | 9.0000 | |
| jmaeng-gatk | INDEL | * | map_l150_m2_e1 | * | 95.8234 | 97.8457 | 93.8830 | 93.2629 | 1408 | 31 | 1412 | 92 | 10 | 10.8696 | |
| gduggal-snapvard | SNP | * | map_siren | het | 95.1967 | 96.5469 | 93.8838 | 69.6200 | 87849 | 3142 | 86743 | 5651 | 524 | 9.2727 | |
| ckim-gatk | SNP | tv | map_l250_m0_e0 | het | 61.4118 | 45.6294 | 93.8849 | 98.4770 | 261 | 311 | 261 | 17 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 93.1260 | 92.3762 | 93.8881 | 76.4157 | 3732 | 308 | 3441 | 224 | 202 | 90.1786 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 96.7471 | 99.7835 | 93.8900 | 68.9437 | 461 | 1 | 461 | 30 | 30 | 100.0000 | |
| jmaeng-gatk | INDEL | * | map_l150_m2_e0 | * | 95.8724 | 97.9403 | 93.8900 | 93.2577 | 1379 | 29 | 1383 | 90 | 9 | 10.0000 | |
| gduggal-snapfb | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 96.4947 | 99.2475 | 93.8904 | 70.4163 | 20047 | 152 | 20055 | 1305 | 194 | 14.8659 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.2224 | 98.6702 | 93.8931 | 48.2213 | 742 | 10 | 738 | 48 | 41 | 85.4167 | |
| asubramanian-gatk | INDEL | D6_15 | map_l100_m2_e1 | het | 92.0981 | 90.3704 | 93.8931 | 91.8176 | 122 | 13 | 123 | 8 | 2 | 25.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 94.0812 | 94.2669 | 93.8962 | 73.0279 | 1858 | 113 | 1846 | 120 | 112 | 93.3333 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 94.0812 | 94.2669 | 93.8962 | 73.0279 | 1858 | 113 | 1846 | 120 | 112 | 93.3333 | |
| gduggal-bwavard | SNP | * | map_l125_m2_e0 | * | 95.7523 | 97.6821 | 93.8973 | 79.8955 | 45640 | 1083 | 45051 | 2928 | 182 | 6.2159 | |
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.6942 | 99.6620 | 93.8981 | 67.0587 | 2949 | 10 | 2893 | 188 | 6 | 3.1915 | |