PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
47701-47750 / 86044 show all | |||||||||||||||
| egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 94.9937 | 96.5215 | 93.5135 | 55.4063 | 3635 | 131 | 3633 | 252 | 82 | 32.5397 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 26.9886 | 15.7699 | 93.5135 | 61.5385 | 255 | 1362 | 346 | 24 | 23 | 95.8333 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 70.1745 | 56.1567 | 93.5185 | 58.4615 | 301 | 235 | 303 | 21 | 15 | 71.4286 | |
| gduggal-snapfb | INDEL | D6_15 | map_l125_m2_e1 | * | 83.2418 | 75.0000 | 93.5185 | 84.8739 | 96 | 32 | 101 | 7 | 6 | 85.7143 | |
| gduggal-snapvard | SNP | * | map_l100_m2_e1 | * | 95.0240 | 96.5773 | 93.5198 | 74.9627 | 72179 | 2558 | 71162 | 4931 | 419 | 8.4973 | |
| anovak-vg | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 94.8371 | 96.1907 | 93.5210 | 57.8026 | 17171 | 680 | 17740 | 1229 | 505 | 41.0903 | |
| ltrigg-rtg2 | INDEL | C1_5 | * | * | 91.7281 | 90.0000 | 93.5238 | 96.2656 | 9 | 1 | 982 | 68 | 6 | 8.8235 | |
| ckim-vqsr | INDEL | D6_15 | map_l100_m2_e1 | het | 94.8905 | 96.2963 | 93.5252 | 92.4743 | 130 | 5 | 130 | 9 | 2 | 22.2222 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 86.7509 | 80.8917 | 93.5252 | 60.6232 | 127 | 30 | 130 | 9 | 4 | 44.4444 | |
| bgallagher-sentieon | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 95.1274 | 96.7822 | 93.5283 | 79.2155 | 3910 | 130 | 3613 | 250 | 209 | 83.6000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 87.2160 | 81.7010 | 93.5294 | 74.9816 | 317 | 71 | 318 | 22 | 14 | 63.6364 | |
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 95.5593 | 97.6793 | 93.5294 | 90.1841 | 1389 | 33 | 1431 | 99 | 25 | 25.2525 | |
| ciseli-custom | SNP | ti | map_siren | homalt | 93.8892 | 94.2504 | 93.5307 | 51.3255 | 35736 | 2180 | 35566 | 2460 | 1879 | 76.3821 | |
| jmaeng-gatk | INDEL | I1_5 | map_l125_m0_e0 | het | 95.4250 | 97.3958 | 93.5323 | 94.0708 | 187 | 5 | 188 | 13 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | ti | map_l100_m0_e0 | * | 95.3330 | 97.2027 | 93.5339 | 77.3132 | 21162 | 609 | 20989 | 1451 | 95 | 6.5472 | |
| jlack-gatk | SNP | * | map_l125_m1_e0 | * | 96.1255 | 98.8638 | 93.5349 | 78.9418 | 44812 | 515 | 44806 | 3097 | 238 | 7.6849 | |
| cchapple-custom | SNP | tv | map_l250_m2_e1 | het | 94.5928 | 95.6743 | 93.5356 | 91.6445 | 1880 | 85 | 1881 | 130 | 24 | 18.4615 | |
| cchapple-custom | INDEL | D1_5 | map_l150_m0_e0 | * | 94.8470 | 96.1938 | 93.5374 | 90.3764 | 278 | 11 | 275 | 19 | 3 | 15.7895 | |
| eyeh-varpipe | INDEL | D6_15 | map_siren | het | 93.1960 | 92.8571 | 93.5374 | 77.7104 | 260 | 20 | 275 | 19 | 15 | 78.9474 | |
| ckim-gatk | INDEL | I1_5 | map_l150_m2_e0 | het | 95.5905 | 97.7346 | 93.5385 | 94.1746 | 302 | 7 | 304 | 21 | 1 | 4.7619 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 95.5179 | 97.5818 | 93.5395 | 36.9311 | 686 | 17 | 1361 | 94 | 10 | 10.6383 | |
| gduggal-bwafb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 91.8726 | 90.2567 | 93.5475 | 72.9167 | 3270 | 353 | 3320 | 229 | 219 | 95.6332 | |
| eyeh-varpipe | INDEL | I1_5 | map_l250_m0_e0 | het | 96.6667 | 100.0000 | 93.5484 | 96.7876 | 15 | 0 | 29 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | HG002complexvar | hetalt | 81.6709 | 72.4696 | 93.5484 | 69.6078 | 179 | 68 | 29 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | * | map_l125_m2_e0 | hetalt | 82.5149 | 73.8095 | 93.5484 | 92.2693 | 31 | 11 | 29 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | * | map_l125_m2_e1 | hetalt | 81.4312 | 72.0930 | 93.5484 | 92.4939 | 31 | 12 | 29 | 2 | 2 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l100_m0_e0 | het | 95.0820 | 96.6667 | 93.5484 | 91.2181 | 58 | 2 | 58 | 4 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 75.3247 | 63.0435 | 93.5484 | 55.0725 | 29 | 17 | 29 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | D1_5 | map_siren | hetalt | 78.6581 | 67.8571 | 93.5484 | 87.0293 | 57 | 27 | 58 | 4 | 4 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l100_m2_e0 | het | 60.8031 | 45.0382 | 93.5484 | 89.8527 | 59 | 72 | 58 | 4 | 3 | 75.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l100_m2_e1 | het | 60.2597 | 44.4444 | 93.5484 | 90.0000 | 60 | 75 | 58 | 4 | 3 | 75.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l150_m0_e0 | * | 90.4232 | 87.5000 | 93.5484 | 93.6214 | 28 | 4 | 29 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | I6_15 | map_siren | homalt | 95.0820 | 96.6667 | 93.5484 | 80.3383 | 87 | 3 | 87 | 6 | 5 | 83.3333 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 86.4727 | 80.3922 | 93.5484 | 94.4840 | 41 | 10 | 29 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 85.3255 | 78.4314 | 93.5484 | 94.5993 | 40 | 11 | 29 | 2 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 79.4521 | 69.0476 | 93.5484 | 96.0710 | 29 | 13 | 29 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | SNP | ti | map_l100_m1_e0 | hetalt | 96.6667 | 100.0000 | 93.5484 | 82.7778 | 29 | 0 | 29 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 79.4521 | 69.0476 | 93.5484 | 90.6627 | 29 | 13 | 29 | 2 | 1 | 50.0000 | |
| gduggal-snapfb | SNP | ti | map_l100_m2_e0 | hetalt | 95.0820 | 96.6667 | 93.5484 | 84.9515 | 29 | 1 | 29 | 2 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 0.0000 | 0.0000 | 93.5484 | 90.7463 | 0 | 0 | 29 | 2 | 1 | 50.0000 | |
| cchapple-custom | SNP | tv | map_l100_m0_e0 | het | 95.4613 | 97.4522 | 93.5501 | 77.1681 | 7038 | 184 | 7049 | 486 | 83 | 17.0782 | |
| ghariani-varprowl | INDEL | I1_5 | map_l100_m1_e0 | * | 93.9359 | 94.3241 | 93.5508 | 86.7120 | 1263 | 76 | 1262 | 87 | 31 | 35.6322 | |
| gduggal-snapfb | INDEL | I1_5 | * | * | 94.6996 | 95.8769 | 93.5508 | 58.0186 | 144452 | 6212 | 145507 | 10031 | 3046 | 30.3659 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 93.8020 | 94.0511 | 93.5541 | 72.2618 | 5739 | 363 | 5762 | 397 | 212 | 53.4005 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 93.3879 | 93.2203 | 93.5561 | 66.6135 | 330 | 24 | 392 | 27 | 6 | 22.2222 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 94.3155 | 95.0867 | 93.5567 | 70.3591 | 329 | 17 | 363 | 25 | 13 | 52.0000 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.5017 | 97.5265 | 93.5593 | 68.9474 | 276 | 7 | 276 | 19 | 19 | 100.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 94.9292 | 96.3368 | 93.5621 | 42.6632 | 3524 | 134 | 3517 | 242 | 235 | 97.1074 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 50.3713 | 34.4623 | 93.5632 | 71.0771 | 407 | 774 | 407 | 28 | 21 | 75.0000 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 17.3176 | 9.5419 | 93.5644 | 56.5591 | 302 | 2863 | 189 | 13 | 13 | 100.0000 | |