PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
47551-47600 / 86044 show all | |||||||||||||||
| ckim-gatk | INDEL | D6_15 | map_l250_m2_e1 | het | 96.5517 | 100.0000 | 93.3333 | 97.8198 | 14 | 0 | 14 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 93.3333 | 93.3333 | 93.3333 | 88.0952 | 14 | 1 | 14 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l125_m1_e0 | * | 93.3333 | 93.3333 | 93.3333 | 97.1042 | 14 | 1 | 14 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I1_5 | map_l150_m1_e0 | het | 95.4471 | 97.6589 | 93.3333 | 93.6299 | 292 | 7 | 294 | 21 | 1 | 4.7619 | |
| gduggal-snapvard | INDEL | D6_15 | map_l150_m2_e0 | homalt | 62.0102 | 46.4286 | 93.3333 | 84.5361 | 13 | 15 | 14 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l150_m2_e1 | homalt | 60.5657 | 44.8276 | 93.3333 | 84.5361 | 13 | 16 | 14 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l250_m0_e0 | het | 93.3333 | 93.3333 | 93.3333 | 97.4315 | 14 | 1 | 14 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | SNP | ti | map_l100_m1_e0 | hetalt | 94.9153 | 96.5517 | 93.3333 | 84.4560 | 28 | 1 | 28 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | ti | map_l150_m1_e0 | hetalt | 93.3333 | 93.3333 | 93.3333 | 88.4615 | 14 | 1 | 14 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | ti | map_l150_m2_e0 | hetalt | 93.3333 | 93.3333 | 93.3333 | 89.2086 | 14 | 1 | 14 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | ti | map_l150_m2_e1 | hetalt | 93.3333 | 93.3333 | 93.3333 | 89.2086 | 14 | 1 | 14 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | * | map_l250_m0_e0 | * | 83.7909 | 76.0187 | 93.3333 | 96.5523 | 1623 | 512 | 1624 | 116 | 43 | 37.0690 | |
| ghariani-varprowl | INDEL | D6_15 | tech_badpromoters | * | 87.5000 | 82.3529 | 93.3333 | 55.8824 | 14 | 3 | 14 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | segdup | * | 94.9153 | 96.5517 | 93.3333 | 95.3811 | 56 | 2 | 56 | 4 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | * | HG002compoundhet | homalt | 96.1466 | 99.1282 | 93.3392 | 44.8696 | 10688 | 94 | 10692 | 763 | 275 | 36.0419 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 94.6261 | 95.9485 | 93.3397 | 58.3275 | 17430 | 736 | 20671 | 1475 | 1218 | 82.5763 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 94.6261 | 95.9485 | 93.3397 | 58.3275 | 17430 | 736 | 20671 | 1475 | 1218 | 82.5763 | |
| ciseli-custom | SNP | * | map_siren | homalt | 93.3935 | 93.4404 | 93.3467 | 52.8475 | 51538 | 3618 | 51210 | 3650 | 2749 | 75.3151 | |
| ndellapenna-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 90.2276 | 87.3057 | 93.3518 | 89.1559 | 337 | 49 | 337 | 24 | 15 | 62.5000 | |
| gduggal-snapplat | INDEL | I1_5 | map_siren | homalt | 85.7005 | 79.2079 | 93.3526 | 86.1508 | 960 | 252 | 969 | 69 | 6 | 8.6957 | |
| jlack-gatk | INDEL | I16_PLUS | HG002complexvar | homalt | 96.5625 | 100.0000 | 93.3535 | 69.9091 | 309 | 0 | 309 | 22 | 21 | 95.4545 | |
| egarrison-hhga | INDEL | I16_PLUS | * | homalt | 93.8558 | 94.3626 | 93.3544 | 58.5193 | 1473 | 88 | 1475 | 105 | 76 | 72.3810 | |
| ghariani-varprowl | INDEL | I1_5 | map_l125_m2_e1 | * | 94.3117 | 95.2874 | 93.3559 | 90.0716 | 829 | 41 | 829 | 59 | 21 | 35.5932 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 91.2087 | 89.1575 | 93.3565 | 53.3541 | 3503 | 426 | 3499 | 249 | 235 | 94.3775 | |
| gduggal-snapfb | INDEL | D1_5 | map_l150_m2_e0 | het | 94.7138 | 96.1089 | 93.3586 | 86.7121 | 494 | 20 | 492 | 35 | 5 | 14.2857 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 67.5892 | 52.9680 | 93.3602 | 88.9531 | 464 | 412 | 464 | 33 | 32 | 96.9697 | |
| jlack-gatk | SNP | tv | map_l100_m2_e0 | * | 96.1775 | 99.1691 | 93.3612 | 77.4337 | 24825 | 208 | 24821 | 1765 | 100 | 5.6657 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 95.9795 | 98.7477 | 93.3623 | 66.3775 | 3233 | 41 | 3221 | 229 | 194 | 84.7162 | |
| gduggal-snapplat | SNP | ti | map_l150_m1_e0 | het | 92.8712 | 92.3848 | 93.3627 | 86.3201 | 11428 | 942 | 11450 | 814 | 456 | 56.0197 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 94.9381 | 96.5675 | 93.3628 | 47.1345 | 422 | 15 | 422 | 30 | 30 | 100.0000 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 84.0119 | 76.3636 | 93.3628 | 58.1998 | 630 | 195 | 633 | 45 | 38 | 84.4444 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 84.0119 | 76.3636 | 93.3628 | 58.1998 | 630 | 195 | 633 | 45 | 38 | 84.4444 | |
| ckim-dragen | INDEL | D6_15 | HG002compoundhet | het | 95.5765 | 97.8972 | 93.3633 | 64.0953 | 838 | 18 | 830 | 59 | 57 | 96.6102 | |
| ghariani-varprowl | INDEL | I1_5 | map_l125_m2_e0 | * | 94.2808 | 95.2159 | 93.3638 | 89.9679 | 816 | 41 | 816 | 58 | 21 | 36.2069 | |
| egarrison-hhga | INDEL | D16_PLUS | * | * | 85.6324 | 79.0831 | 93.3644 | 63.5644 | 5365 | 1419 | 5417 | 385 | 330 | 85.7143 | |
| egarrison-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 91.2037 | 89.1403 | 93.3649 | 89.3380 | 197 | 24 | 197 | 14 | 9 | 64.2857 | |
| gduggal-snapplat | SNP | tv | map_l125_m1_e0 | het | 93.1767 | 92.9883 | 93.3657 | 84.9692 | 9416 | 710 | 9415 | 669 | 344 | 51.4200 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 96.5732 | 100.0000 | 93.3735 | 84.6011 | 155 | 0 | 155 | 11 | 1 | 9.0909 | |
| jpowers-varprowl | INDEL | * | map_l250_m2_e0 | * | 91.3580 | 89.4260 | 93.3754 | 96.4605 | 296 | 35 | 296 | 21 | 12 | 57.1429 | |
| jmaeng-gatk | INDEL | D1_5 | map_l100_m0_e0 | * | 95.5921 | 97.9143 | 93.3775 | 89.4196 | 845 | 18 | 846 | 60 | 5 | 8.3333 | |
| gduggal-snapfb | INDEL | I1_5 | map_l150_m1_e0 | het | 93.6777 | 93.9799 | 93.3775 | 88.3891 | 281 | 18 | 282 | 20 | 3 | 15.0000 | |
| gduggal-snapfb | INDEL | D6_15 | HG002compoundhet | hetalt | 76.8495 | 65.2926 | 93.3775 | 40.5512 | 5322 | 2829 | 846 | 60 | 59 | 98.3333 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 91.5169 | 89.7281 | 93.3784 | 46.7817 | 1485 | 170 | 1382 | 98 | 58 | 59.1837 | |
| ghariani-varprowl | SNP | tv | map_l150_m0_e0 | * | 95.4679 | 97.6521 | 93.3792 | 85.3184 | 4076 | 98 | 4076 | 289 | 54 | 18.6851 | |
| gduggal-snapvard | SNP | * | map_l100_m1_e0 | * | 94.9349 | 96.5402 | 93.3822 | 73.4477 | 69898 | 2505 | 68917 | 4884 | 410 | 8.3948 | |
| astatham-gatk | INDEL | D6_15 | map_l100_m2_e0 | het | 95.1311 | 96.9466 | 93.3824 | 90.3546 | 127 | 4 | 127 | 9 | 2 | 22.2222 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 95.9629 | 98.6871 | 93.3851 | 38.4673 | 2255 | 30 | 2287 | 162 | 154 | 95.0617 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 93.0041 | 92.6230 | 93.3884 | 80.4207 | 113 | 9 | 113 | 8 | 8 | 100.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 95.5603 | 97.8355 | 93.3884 | 59.3960 | 452 | 10 | 452 | 32 | 19 | 59.3750 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 93.4155 | 93.4426 | 93.3884 | 74.3100 | 114 | 8 | 113 | 8 | 8 | 100.0000 | |