PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
46851-46900 / 86044 show all | |||||||||||||||
| cchapple-custom | INDEL | * | map_l100_m0_e0 | het | 94.3799 | 96.1802 | 92.6457 | 86.7828 | 982 | 39 | 1033 | 82 | 17 | 20.7317 | |
| gduggal-snapfb | SNP | ti | map_l250_m1_e0 | het | 93.8477 | 95.0809 | 92.6461 | 86.7956 | 2822 | 146 | 2822 | 224 | 118 | 52.6786 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 64.3340 | 49.2754 | 92.6471 | 74.9077 | 34 | 35 | 63 | 5 | 5 | 100.0000 | |
| qzeng-custom | INDEL | * | map_l150_m2_e1 | het | 81.2150 | 72.2944 | 92.6471 | 95.0678 | 668 | 256 | 819 | 65 | 30 | 46.1538 | |
| qzeng-custom | INDEL | I1_5 | map_l250_m2_e1 | het | 75.4491 | 63.6364 | 92.6471 | 98.4019 | 42 | 24 | 63 | 5 | 4 | 80.0000 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 92.6471 | 92.6471 | 92.6471 | 97.3344 | 63 | 5 | 63 | 5 | 3 | 60.0000 | |
| ckim-gatk | INDEL | I1_5 | map_l125_m0_e0 | het | 95.2090 | 97.9167 | 92.6471 | 93.7748 | 188 | 4 | 189 | 15 | 0 | 0.0000 | |
| jli-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.0299 | 95.4545 | 92.6471 | 93.4866 | 63 | 3 | 63 | 5 | 3 | 60.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | map_siren | * | 81.8182 | 73.2558 | 92.6471 | 71.7842 | 63 | 23 | 63 | 5 | 3 | 60.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | HG002compoundhet | het | 90.1398 | 87.7647 | 92.6471 | 86.3079 | 746 | 104 | 693 | 55 | 49 | 89.0909 | |
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 96.0585 | 99.7289 | 92.6487 | 50.1527 | 11402 | 31 | 10889 | 864 | 45 | 5.2083 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 92.5148 | 92.3810 | 92.6491 | 58.3237 | 679 | 56 | 668 | 53 | 51 | 96.2264 | |
| qzeng-custom | INDEL | * | map_l150_m2_e0 | het | 81.2179 | 72.2958 | 92.6521 | 95.0610 | 655 | 251 | 807 | 64 | 30 | 46.8750 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.6913 | 98.9362 | 92.6526 | 62.3535 | 744 | 8 | 744 | 59 | 58 | 98.3051 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.6913 | 98.9362 | 92.6526 | 62.5292 | 744 | 8 | 744 | 59 | 59 | 100.0000 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.6913 | 98.9362 | 92.6526 | 62.3535 | 744 | 8 | 744 | 59 | 58 | 98.3051 | |
| cchapple-custom | INDEL | D1_5 | map_l250_m1_e0 | * | 94.8142 | 97.0760 | 92.6554 | 94.4234 | 166 | 5 | 164 | 13 | 1 | 7.6923 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 74.7337 | 62.6214 | 92.6554 | 54.8469 | 129 | 77 | 164 | 13 | 12 | 92.3077 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 91.9006 | 91.1550 | 92.6585 | 71.5146 | 876 | 85 | 833 | 66 | 61 | 92.4242 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 92.5881 | 92.5170 | 92.6593 | 58.2176 | 680 | 55 | 669 | 53 | 51 | 96.2264 | |
| ndellapenna-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 91.7765 | 90.9091 | 92.6606 | 88.7745 | 100 | 10 | 101 | 8 | 8 | 100.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l250_m2_e1 | * | 90.5830 | 88.5965 | 92.6606 | 96.5053 | 101 | 13 | 101 | 8 | 4 | 50.0000 | |
| egarrison-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 92.2374 | 91.8182 | 92.6606 | 88.8205 | 101 | 9 | 101 | 8 | 8 | 100.0000 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 94.5069 | 96.4277 | 92.6612 | 46.2676 | 15197 | 563 | 42020 | 3328 | 2198 | 66.0457 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 91.8474 | 91.0470 | 92.6620 | 63.5458 | 1200 | 118 | 1187 | 94 | 90 | 95.7447 | |
| gduggal-snapfb | INDEL | I1_5 | map_l100_m0_e0 | * | 94.1894 | 95.7643 | 92.6655 | 86.2889 | 520 | 23 | 518 | 41 | 8 | 19.5122 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.3688 | 98.2332 | 92.6667 | 69.5122 | 278 | 5 | 278 | 22 | 22 | 100.0000 | |
| gduggal-snapfb | SNP | * | map_l250_m1_e0 | het | 94.0213 | 95.4154 | 92.6675 | 86.7306 | 4537 | 218 | 4537 | 359 | 166 | 46.2396 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 92.6612 | 92.6531 | 92.6694 | 58.4244 | 681 | 54 | 670 | 53 | 51 | 96.2264 | |
| jmaeng-gatk | INDEL | * | func_cds | het | 95.9801 | 99.5327 | 92.6724 | 62.8205 | 213 | 1 | 215 | 17 | 0 | 0.0000 | |
| jlack-gatk | SNP | * | map_l150_m2_e0 | * | 95.5915 | 98.6908 | 92.6808 | 83.6558 | 31435 | 417 | 31429 | 2482 | 191 | 7.6954 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 92.6829 | 92.6829 | 92.6829 | 73.8854 | 38 | 3 | 38 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | segdup | het | 96.2025 | 100.0000 | 92.6829 | 93.1667 | 37 | 0 | 38 | 3 | 1 | 33.3333 | |
| mlin-fermikit | SNP | tv | tech_badpromoters | homalt | 95.0000 | 97.4359 | 92.6829 | 49.3827 | 38 | 1 | 38 | 3 | 2 | 66.6667 | |
| qzeng-custom | SNP | * | tech_badpromoters | het | 95.5975 | 98.7013 | 92.6829 | 49.3827 | 76 | 1 | 76 | 6 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 88.6698 | 84.9899 | 92.6829 | 52.2246 | 419 | 74 | 418 | 33 | 30 | 90.9091 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 91.5663 | 90.4762 | 92.6829 | 99.3598 | 38 | 4 | 38 | 3 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | segdup | het | 96.2025 | 100.0000 | 92.6829 | 92.4908 | 37 | 0 | 38 | 3 | 1 | 33.3333 | |
| eyeh-varpipe | INDEL | D6_15 | func_cds | * | 87.9743 | 83.7209 | 92.6829 | 46.7532 | 36 | 7 | 38 | 3 | 3 | 100.0000 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 91.5663 | 90.4762 | 92.6829 | 99.3618 | 38 | 4 | 38 | 3 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D6_15 | map_l150_m1_e0 | het | 95.0000 | 97.4359 | 92.6829 | 95.6978 | 38 | 1 | 38 | 3 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D6_15 | segdup | het | 89.7285 | 86.9565 | 92.6829 | 92.5319 | 80 | 12 | 76 | 6 | 6 | 100.0000 | |
| qzeng-custom | SNP | ti | map_l250_m2_e0 | * | 74.3996 | 62.1406 | 92.6844 | 95.5558 | 3112 | 1896 | 3104 | 245 | 206 | 84.0816 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 95.3000 | 98.0590 | 92.6920 | 44.9432 | 3587 | 71 | 3729 | 294 | 269 | 91.4966 | |
| qzeng-custom | SNP | tv | map_l250_m2_e0 | * | 77.9675 | 67.2797 | 92.6923 | 95.3450 | 1939 | 943 | 1928 | 152 | 125 | 82.2368 | |
| eyeh-varpipe | INDEL | C1_5 | * | * | 91.3266 | 90.0000 | 92.6929 | 92.2121 | 9 | 1 | 2499 | 197 | 109 | 55.3299 | |
| jlack-gatk | SNP | * | map_l100_m0_e0 | * | 95.5864 | 98.6663 | 92.6930 | 78.0628 | 32403 | 438 | 32399 | 2554 | 207 | 8.1049 | |
| jlack-gatk | SNP | * | map_l150_m2_e1 | * | 95.6027 | 98.6992 | 92.6947 | 83.7025 | 31791 | 419 | 31785 | 2505 | 193 | 7.7046 | |
| jpowers-varprowl | INDEL | * | map_siren | * | 91.5569 | 90.4453 | 92.6961 | 81.8403 | 6702 | 708 | 6701 | 528 | 440 | 83.3333 | |
| gduggal-snapfb | SNP | tv | map_l250_m2_e0 | het | 94.4093 | 96.1856 | 92.6975 | 87.4548 | 1866 | 74 | 1866 | 147 | 50 | 34.0136 | |