PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
46751-46800 / 86044 show all | |||||||||||||||
| jlack-gatk | SNP | * | map_l150_m1_e0 | * | 95.4882 | 98.6507 | 92.5222 | 82.5036 | 30196 | 413 | 30190 | 2440 | 190 | 7.7869 | |
| jlack-gatk | INDEL | D16_PLUS | * | het | 95.4976 | 98.6705 | 92.5225 | 78.1303 | 3117 | 42 | 2883 | 233 | 133 | 57.0815 | |
| ckim-vqsr | INDEL | I1_5 | map_l150_m0_e0 | het | 92.9577 | 93.3962 | 92.5234 | 96.0647 | 99 | 7 | 99 | 8 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l250_m1_e0 | * | 92.9577 | 93.3962 | 92.5234 | 94.8483 | 99 | 7 | 99 | 8 | 1 | 12.5000 | |
| jpowers-varprowl | INDEL | D1_5 | map_l150_m1_e0 | het | 93.7564 | 95.0207 | 92.5253 | 90.0901 | 458 | 24 | 458 | 37 | 19 | 51.3514 | |
| ghariani-varprowl | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 95.6349 | 98.9595 | 92.5264 | 70.1656 | 27390 | 288 | 27497 | 2221 | 284 | 12.7870 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 93.7394 | 94.9841 | 92.5270 | 73.6767 | 1193 | 63 | 1201 | 97 | 62 | 63.9175 | |
| cchapple-custom | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.2958 | 98.2345 | 92.5278 | 57.6262 | 2170 | 39 | 2167 | 175 | 160 | 91.4286 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 94.9862 | 97.5782 | 92.5283 | 63.5798 | 14263 | 354 | 14130 | 1141 | 1110 | 97.2831 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 95.9908 | 99.7206 | 92.5300 | 66.9362 | 4283 | 12 | 4162 | 336 | 9 | 2.6786 | |
| ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 95.7049 | 99.1018 | 92.5331 | 67.6378 | 1324 | 12 | 1326 | 107 | 8 | 7.4766 | |
| gduggal-snapvard | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 95.2200 | 98.0630 | 92.5373 | 51.0491 | 2430 | 48 | 2418 | 195 | 3 | 1.5385 | |
| qzeng-custom | INDEL | I1_5 | map_l250_m2_e0 | het | 75.4127 | 63.6364 | 92.5373 | 98.3941 | 42 | 24 | 62 | 5 | 4 | 80.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.6298 | 98.9362 | 92.5373 | 61.3647 | 744 | 8 | 744 | 60 | 60 | 100.0000 | |
| ckim-gatk | INDEL | D6_15 | map_l125_m1_e0 | het | 94.6565 | 96.8750 | 92.5373 | 94.2637 | 62 | 2 | 62 | 5 | 1 | 20.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 94.1176 | 95.7529 | 92.5373 | 60.1190 | 248 | 11 | 248 | 20 | 17 | 85.0000 | |
| ckim-dragen | INDEL | * | segdup | het | 95.8400 | 99.3861 | 92.5383 | 95.9567 | 1457 | 9 | 1451 | 117 | 2 | 1.7094 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 95.2994 | 98.2297 | 92.5388 | 63.5670 | 8212 | 148 | 8223 | 663 | 640 | 96.5309 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 95.2994 | 98.2297 | 92.5388 | 63.5670 | 8212 | 148 | 8223 | 663 | 640 | 96.5309 | |
| qzeng-custom | INDEL | I1_5 | map_l100_m2_e0 | het | 80.9908 | 72.0050 | 92.5390 | 89.7242 | 571 | 222 | 831 | 67 | 13 | 19.4030 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 93.4653 | 94.4068 | 92.5425 | 38.8281 | 6971 | 413 | 14221 | 1146 | 906 | 79.0576 | |
| eyeh-varpipe | SNP | tv | map_l100_m2_e0 | het | 96.0096 | 99.7465 | 92.5426 | 72.2574 | 15737 | 40 | 15549 | 1253 | 16 | 1.2769 | |
| mlin-fermikit | INDEL | * | map_l100_m1_e0 | het | 74.2630 | 62.0134 | 92.5433 | 78.0056 | 1386 | 849 | 1390 | 112 | 68 | 60.7143 | |
| ckim-vqsr | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 94.3318 | 96.1892 | 92.5447 | 77.6767 | 2095 | 83 | 1862 | 150 | 136 | 90.6667 | |
| jli-custom | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.6661 | 99.0033 | 92.5466 | 51.1010 | 596 | 6 | 596 | 48 | 47 | 97.9167 | |
| gduggal-snapfb | INDEL | * | map_l250_m2_e0 | * | 91.2711 | 90.0302 | 92.5466 | 95.8100 | 298 | 33 | 298 | 24 | 6 | 25.0000 | |
| mlin-fermikit | INDEL | I6_15 | * | homalt | 94.2236 | 95.9609 | 92.5481 | 47.3706 | 5987 | 252 | 6011 | 484 | 481 | 99.3802 | |
| ckim-gatk | INDEL | * | map_l125_m2_e1 | het | 95.4354 | 98.5085 | 92.5482 | 92.5354 | 1387 | 21 | 1391 | 112 | 7 | 6.2500 | |
| ghariani-varprowl | INDEL | D1_5 | HG002complexvar | het | 95.4621 | 98.5649 | 92.5488 | 58.7032 | 20467 | 298 | 20407 | 1643 | 1130 | 68.7766 | |
| egarrison-hhga | INDEL | D6_15 | map_l100_m2_e0 | * | 90.3524 | 88.2576 | 92.5490 | 85.5524 | 233 | 31 | 236 | 19 | 11 | 57.8947 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 95.3424 | 98.3065 | 92.5518 | 69.4000 | 5747 | 99 | 5716 | 460 | 444 | 96.5217 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 95.3424 | 98.3065 | 92.5518 | 69.4000 | 5747 | 99 | 5716 | 460 | 444 | 96.5217 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 92.5881 | 92.6230 | 92.5532 | 80.7456 | 452 | 36 | 435 | 35 | 16 | 45.7143 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 74.9430 | 62.9630 | 92.5532 | 76.6169 | 85 | 50 | 87 | 7 | 6 | 85.7143 | |
| eyeh-varpipe | SNP | tv | map_l100_m2_e1 | het | 96.0176 | 99.7490 | 92.5553 | 72.3251 | 15898 | 40 | 15702 | 1263 | 16 | 1.2668 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 90.2590 | 88.0734 | 92.5558 | 81.8305 | 384 | 52 | 373 | 30 | 15 | 50.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.5702 | 98.7805 | 92.5620 | 88.2296 | 162 | 2 | 112 | 9 | 7 | 77.7778 | |
| cchapple-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 89.3162 | 86.2903 | 92.5620 | 89.7544 | 107 | 17 | 112 | 9 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.5702 | 98.7805 | 92.5620 | 88.0435 | 162 | 2 | 112 | 9 | 7 | 77.7778 | |
| jlack-gatk | SNP | ti | map_l125_m0_e0 | * | 95.3999 | 98.4093 | 92.5691 | 82.2522 | 12559 | 203 | 12557 | 1008 | 96 | 9.5238 | |
| mlin-fermikit | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 86.4488 | 81.0811 | 92.5776 | 87.3872 | 690 | 161 | 686 | 55 | 9 | 16.3636 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 92.5795 | 92.5795 | 92.5795 | 69.2391 | 262 | 21 | 262 | 21 | 19 | 90.4762 | |
| qzeng-custom | INDEL | * | map_l150_m1_e0 | het | 80.8118 | 71.6959 | 92.5834 | 95.0292 | 613 | 242 | 749 | 60 | 29 | 48.3333 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 90.5721 | 88.6430 | 92.5871 | 36.0947 | 21753 | 2787 | 21720 | 1739 | 1695 | 97.4698 | |
| eyeh-varpipe | INDEL | * | HG002complexvar | homalt | 93.9842 | 95.4231 | 92.5880 | 51.8445 | 25790 | 1237 | 26070 | 2087 | 2039 | 97.7000 | |
| eyeh-varpipe | INDEL | C1_5 | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 92.5926 | 97.2644 | 0 | 0 | 25 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D6_15 | segdup | homalt | 96.1538 | 100.0000 | 92.5926 | 92.4051 | 50 | 0 | 50 | 4 | 4 | 100.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 78.7919 | 68.5714 | 92.5926 | 64.4737 | 24 | 11 | 25 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | segdup | het | 94.1851 | 95.8333 | 92.5926 | 93.6620 | 23 | 1 | 25 | 2 | 1 | 50.0000 | |
| ckim-vqsr | INDEL | D6_15 | segdup | homalt | 96.1538 | 100.0000 | 92.5926 | 92.3944 | 50 | 0 | 50 | 4 | 4 | 100.0000 | |