PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
45951-46000 / 86044 show all | |||||||||||||||
| gduggal-bwafb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 91.4286 | 91.2173 | 91.6409 | 57.2469 | 592 | 57 | 592 | 54 | 52 | 96.2963 | |
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 67.7973 | 53.7975 | 91.6468 | 94.9895 | 765 | 657 | 768 | 70 | 16 | 22.8571 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 93.0202 | 94.4334 | 91.6486 | 40.7109 | 8991 | 530 | 11863 | 1081 | 1022 | 94.5421 | |
| ghariani-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 95.4729 | 99.6276 | 91.6509 | 80.5506 | 2408 | 9 | 2415 | 220 | 130 | 59.0909 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 64.9523 | 50.2994 | 91.6515 | 76.9456 | 504 | 498 | 505 | 46 | 8 | 17.3913 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 58.6858 | 43.1579 | 91.6667 | 90.6222 | 287 | 378 | 286 | 26 | 22 | 84.6154 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 74.0849 | 62.1622 | 91.6667 | 93.6508 | 23 | 14 | 22 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 81.4815 | 73.3333 | 91.6667 | 96.9773 | 11 | 4 | 11 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 0.0000 | 0.0000 | 91.6667 | 82.8571 | 0 | 0 | 11 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 0.0000 | 0.0000 | 91.6667 | 91.3669 | 0 | 0 | 11 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 16.8906 | 9.3023 | 91.6667 | 74.3590 | 56 | 546 | 55 | 5 | 5 | 100.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 69.6011 | 56.0976 | 91.6667 | 72.4138 | 23 | 18 | 22 | 2 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l100_m1_e0 | het | 74.7073 | 63.0435 | 91.6667 | 81.4433 | 29 | 17 | 33 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l100_m2_e0 | het | 72.8311 | 60.4167 | 91.6667 | 82.9384 | 29 | 19 | 33 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l150_m1_e0 | * | 81.4815 | 73.3333 | 91.6667 | 92.2581 | 11 | 4 | 11 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 71.6612 | 58.8235 | 91.6667 | 79.6610 | 40 | 28 | 11 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 71.6612 | 58.8235 | 91.6667 | 80.3279 | 40 | 28 | 11 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l125_m0_e0 | homalt | 91.6667 | 91.6667 | 91.6667 | 94.8936 | 11 | 1 | 11 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_l100_m0_e0 | homalt | 91.6667 | 91.6667 | 91.6667 | 84.0000 | 11 | 1 | 11 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_l125_m0_e0 | * | 81.4815 | 73.3333 | 91.6667 | 91.5493 | 11 | 4 | 11 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_siren | homalt | 58.4071 | 42.8571 | 91.6667 | 75.0000 | 9 | 12 | 11 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | decoy | het | 0.0000 | 0.0000 | 91.6667 | 99.6050 | 0 | 0 | 11 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 24.8881 | 14.3987 | 91.6667 | 67.0000 | 91 | 541 | 121 | 11 | 11 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l150_m2_e0 | homalt | 88.5906 | 85.7143 | 91.6667 | 85.6287 | 6 | 1 | 22 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l150_m2_e1 | homalt | 89.5349 | 87.5000 | 91.6667 | 85.8824 | 7 | 1 | 22 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l150_m2_e0 | het | 83.1533 | 76.0870 | 91.6667 | 83.2168 | 35 | 11 | 44 | 4 | 3 | 75.0000 | |
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 78.5714 | 68.7500 | 91.6667 | 97.1223 | 11 | 5 | 11 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 66.8693 | 52.6316 | 91.6667 | 69.2308 | 10 | 9 | 11 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 63.8792 | 49.0196 | 91.6667 | 42.8571 | 25 | 26 | 11 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 77.1930 | 66.6667 | 91.6667 | 92.2414 | 34 | 17 | 33 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l250_m1_e0 | het | 95.6522 | 100.0000 | 91.6667 | 96.3636 | 11 | 0 | 11 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_siren | hetalt | 74.3243 | 62.5000 | 91.6667 | 84.0000 | 10 | 6 | 11 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 91.6667 | 91.6667 | 91.6667 | 72.7273 | 33 | 3 | 33 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 90.6418 | 89.6396 | 91.6667 | 81.6483 | 199 | 23 | 198 | 18 | 15 | 83.3333 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 90.6827 | 89.7196 | 91.6667 | 60.0255 | 2880 | 330 | 2871 | 261 | 260 | 99.6169 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l100_m2_e1 | het | 94.6237 | 97.7778 | 91.6667 | 88.4430 | 132 | 3 | 132 | 12 | 7 | 58.3333 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 87.8698 | 84.3750 | 91.6667 | 85.3807 | 135 | 25 | 132 | 12 | 11 | 91.6667 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 91.6667 | 91.6667 | 91.6667 | 70.0000 | 33 | 3 | 33 | 3 | 3 | 100.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 57.8947 | 42.3077 | 91.6667 | 78.1818 | 11 | 15 | 11 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 52.3810 | 36.6667 | 91.6667 | 78.9474 | 11 | 19 | 11 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 88.0000 | 84.6154 | 91.6667 | 47.8261 | 11 | 2 | 11 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l100_m0_e0 | homalt | 91.6667 | 91.6667 | 91.6667 | 86.0465 | 11 | 1 | 11 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | * | map_l125_m0_e0 | het | 89.6574 | 87.7342 | 91.6667 | 93.1495 | 515 | 72 | 517 | 47 | 2 | 4.2553 | |
| cchapple-custom | INDEL | C16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 91.6667 | 97.4630 | 0 | 0 | 11 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | C1_5 | HG002complexvar | homalt | 0.0000 | 0.0000 | 91.6667 | 85.1546 | 0 | 0 | 66 | 6 | 4 | 66.6667 | |
| anovak-vg | INDEL | D6_15 | map_l125_m0_e0 | homalt | 91.6667 | 91.6667 | 91.6667 | 91.4286 | 11 | 1 | 11 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 93.7037 | 95.8333 | 91.6667 | 76.6990 | 23 | 1 | 22 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | map_l100_m1_e0 | * | 88.0000 | 84.6154 | 91.6667 | 95.7895 | 22 | 4 | 22 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l150_m1_e0 | het | 81.4815 | 73.3333 | 91.6667 | 96.5517 | 11 | 4 | 11 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l150_m2_e0 | het | 81.4815 | 73.3333 | 91.6667 | 96.8504 | 11 | 4 | 11 | 1 | 1 | 100.0000 | |