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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 904 905 906 907 908 909 910 911 912 ... 1720 1721 » 45351-45400 / 86044 show all
ndellapenna-hhga	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	93.6003	96.5481	90.8273	56.5817	3636	130	3634	367	158	43.0518
ndellapenna-hhga	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	93.6003	96.5481	90.8273	56.5817	3636	130	3634	367	158	43.0518
jpowers-varprowl	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	94.0567	97.5229	90.8285	81.7751	19094	485	19163	1935	59	3.0491
jpowers-varprowl	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	94.0567	97.5229	90.8285	81.7751	19094	485	19163	1935	59	3.0491
jmaeng-gatk	INDEL	*	map_l250_m2_e0	*	93.2353	95.7704	90.8309	97.3828	317	14	317	32	4	12.5000
ciseli-custom	INDEL	D1_5	segdup	het	92.5651	94.3642	90.8333	95.6342	653	39	654	66	21	31.8182
astatham-gatk	INDEL	D1_5	map_l250_m1_e0	het	94.3723	98.1982	90.8333	95.7865	109	2	109	11	1	9.0909
ghariani-varprowl	INDEL	I1_5	map_l100_m1_e0	het	94.4317	98.3269	90.8333	89.6462	764	13	763	77	26	33.7662
hfeng-pmm2	SNP	*	lowcmp_SimpleRepeat_quadTR_51to200	*	82.8897	76.2238	90.8333	92.9947	109	34	109	11	1	9.0909
eyeh-varpipe	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	85.8715	81.4199	90.8380	65.8788	539	123	813	82	43	52.4390
ghariani-varprowl	SNP	*	map_l250_m1_e0	het	94.1868	97.7918	90.8381	91.9418	4650	105	4650	469	80	17.0576
ndellapenna-hhga	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	82.5216	75.5967	90.8430	68.5420	2692	869	2748	277	196	70.7581
ndellapenna-hhga	INDEL	I16_PLUS	HG002compoundhet	*	86.2940	82.1745	90.8483	50.5089	1761	382	1767	178	133	74.7191
egarrison-hhga	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	91.6796	92.5249	90.8497	49.7124	557	45	556	56	25	44.6429
ciseli-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	77.3509	67.3423	90.8537	63.9164	299	145	298	30	27	90.0000
ciseli-custom	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	92.2062	93.5907	90.8621	57.8426	10572	724	10550	1061	847	79.8303
ckim-dragen	INDEL	*	map_l250_m2_e1	het	92.7858	94.7867	90.8676	96.7304	200	11	199	20	2	10.0000
gduggal-bwafb	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	78.6020	69.2502	90.8738	58.9733	4378	1944	3515	353	342	96.8839
gduggal-bwafb	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	78.6020	69.2502	90.8738	58.9733	4378	1944	3515	353	342	96.8839
gduggal-snapplat	INDEL	I1_5	HG002compoundhet	hetalt	56.9417	41.4601	90.8753	78.7291	4634	6543	4651	467	392	83.9400
ckim-isaac	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	83.4511	77.1464	90.8779	45.5977	1860	551	1853	186	163	87.6344
jmaeng-gatk	INDEL	*	map_l250_m2_e1	*	93.2749	95.7958	90.8832	97.4381	319	14	319	32	4	12.5000
gduggal-snapplat	SNP	*	map_l250_m1_e0	het	87.0994	83.6172	90.8842	94.6651	3976	779	3978	399	190	47.6190
mlin-fermikit	SNP	*	map_l100_m2_e0	*	72.7370	60.6281	90.8897	55.5979	44843	29121	44835	4494	3956	88.0285
ghariani-varprowl	SNP	tv	map_l150_m0_e0	het	94.6019	98.6282	90.8914	86.7158	2804	39	2804	281	52	18.5053
ckim-gatk	INDEL	*	map_l100_m0_e0	het	94.5578	98.5309	90.8927	91.4725	1006	15	1008	101	5	4.9505
jlack-gatk	SNP	ti	map_l250_m2_e0	*	94.3425	98.0631	90.8939	92.7804	4911	97	4911	492	44	8.9431
gduggal-bwavard	SNP	tv	map_l100_m1_e0	het	94.3634	98.1060	90.8959	79.1108	15125	292	15076	1510	87	5.7616
gduggal-snapplat	SNP	tv	map_l125_m0_e0	het	89.8264	88.7753	90.9027	88.4354	3907	494	3907	391	205	52.4297
ckim-dragen	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	95.1348	99.7788	90.9039	60.3967	3158	7	3158	316	314	99.3671
ckim-dragen	INDEL	*	lowcmp_SimpleRepeat_homopolymer_gt10	homalt	93.0233	95.2381	90.9091	99.9650	20	1	20	2	2	100.0000
ckim-dragen	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_51to200	homalt	94.3396	98.0392	90.9091	62.3288	100	2	100	10	10	100.0000
ckim-dragen	INDEL	D6_15	map_l150_m0_e0	het	95.2381	100.0000	90.9091	94.3005	20	0	20	2	0	0.0000
ckim-dragen	INDEL	D6_15	segdup	homalt	95.2381	100.0000	90.9091	93.2927	50	0	50	5	5	100.0000
ckim-dragen	INDEL	I16_PLUS	map_l150_m1_e0	*	90.9091	90.9091	90.9091	94.9074	10	1	10	1	0	0.0000
ckim-dragen	INDEL	I16_PLUS	map_l150_m2_e0	*	90.9091	90.9091	90.9091	95.7198	10	1	10	1	0	0.0000
ckim-gatk	INDEL	*	decoy	*	95.2381	100.0000	90.9091	99.9688	10	0	10	1	0	0.0000
cchapple-custom	INDEL	D16_PLUS	func_cds	*	86.9565	83.3333	90.9091	75.5556	10	2	10	1	1	100.0000
cchapple-custom	INDEL	I16_PLUS	map_l100_m0_e0	het	95.2381	100.0000	90.9091	94.0860	8	0	10	1	0	0.0000
ckim-gatk	INDEL	D16_PLUS	map_l125_m1_e0	het	95.2381	100.0000	90.9091	97.3526	20	0	20	2	0	0.0000
ckim-gatk	INDEL	D16_PLUS	map_l125_m2_e0	het	95.2381	100.0000	90.9091	97.7620	20	0	20	2	0	0.0000
ckim-gatk	INDEL	D16_PLUS	map_l125_m2_e1	het	95.2381	100.0000	90.9091	97.8109	20	0	20	2	0	0.0000
ckim-gatk	INDEL	I16_PLUS	map_l150_m1_e0	*	90.9091	90.9091	90.9091	97.4654	10	1	10	1	0	0.0000
ckim-gatk	INDEL	I16_PLUS	map_l150_m2_e0	*	90.9091	90.9091	90.9091	97.6891	10	1	10	1	0	0.0000
ckim-gatk	INDEL	I16_PLUS	map_l150_m2_e1	*	90.9091	90.9091	90.9091	97.6987	10	1	10	1	0	0.0000
jlack-gatk	INDEL	I16_PLUS	map_l100_m0_e0	*	90.9091	90.9091	90.9091	97.3301	10	1	10	1	0	0.0000
jlack-gatk	SNP	ti	map_l100_m2_e1	hetalt	93.7500	96.7742	90.9091	83.1633	30	1	30	3	3	100.0000
hfeng-pmm3	INDEL	D16_PLUS	map_siren	het	92.2299	93.5897	90.9091	94.3672	73	5	70	7	1	14.2857
hfeng-pmm3	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_gt10	het	80.0000	71.4286	90.9091	99.2920	30	12	30	3	0	0.0000
hfeng-pmm3	INDEL	I6_15	map_l125_m0_e0	*	76.9231	66.6667	90.9091	95.0000	10	5	10	1	1	100.0000

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