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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
45301-45350 / 86044 show all
astatham-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
94.6615
98.9726
90.7104
82.2631
86796646863
92.6471
ghariani-varprowlINDELI1_5segdup*
91.1523
91.5958
90.7129
95.2994
970899679967
67.6768
cchapple-customINDELC6_15*het
95.1311
100.0000
90.7143
93.8570
702542610
38.4615
gduggal-snapfbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
92.9003
95.1929
90.7155
79.9240
16159816161901657193
11.6476
gduggal-snapfbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
92.9003
95.1929
90.7155
79.9240
16159816161901657193
11.6476
qzeng-customINDELI1_5HG002compoundhet*
82.4804
75.6151
90.7168
64.6037
934330139391961822
85.5359
jlack-gatkINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50het
94.1563
97.8654
90.7180
83.3187
596135185340
75.4717
qzeng-customINDELI16_PLUSHG002complexvarhet
88.3834
86.1654
90.7186
58.7909
573926066211
17.7419
qzeng-customINDEL*map_l150_m0_e0het
80.0048
71.5543
90.7186
97.0277
244973033116
51.6129
qzeng-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
95.1351
100.0000
90.7216
63.3962
6808894
44.4444
qzeng-customINDEL*map_sirenhet
88.2436
85.8917
90.7279
86.0479
3872636432544293
21.0407
ciseli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
94.8802
99.4227
90.7347
62.0390
223913222322739
17.1806
mlin-fermikitSNP*map_l100_m1_e0*
72.2095
59.9657
90.7360
51.7425
43417289864340944323924
88.5379
jlack-gatkINDELD6_15map_l100_m1_e0*
92.8030
94.9612
90.7407
88.2660
24513245253
12.0000
hfeng-pmm3SNPtilowcmp_SimpleRepeat_quadTR_51to200het
81.6667
74.2424
90.7407
94.0463
49174950
0.0000
gduggal-bwaplatSNP*lowcmp_SimpleRepeat_quadTR_51to200*
49.0051
33.5664
90.7407
98.6432
48954953
60.0000
gduggal-bwafbINDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
88.3609
86.1027
90.7407
70.8221
570926867040
57.1429
hfeng-pmm1INDEL*map_l250_m0_e0het
91.5888
92.4528
90.7407
96.9849
4944951
20.0000
anovak-vgINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
89.1839
87.6797
90.7407
59.6010
427604414526
57.7778
eyeh-varpipeINDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
27.1199
15.9420
90.7489
71.4824
1437542062119
90.4762
ckim-isaacINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200*
80.6824
72.6236
90.7531
35.9976
9553609529793
95.8763
anovak-vgINDELD1_5HG002complexvarhomalt
92.9611
95.2727
90.7590
57.9711
10097501102241041840
80.6916
ghariani-varprowlINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
86.9792
83.5000
90.7609
61.7464
167331671713
76.4706
gduggal-snapfbINDELI1_5func_cdshet
93.5987
96.6102
90.7692
41.4414
5725961
16.6667
gduggal-snapfbINDELD1_5map_l250_m2_e1het
93.6508
96.7213
90.7692
93.7137
1184118121
8.3333
gduggal-bwafbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
89.9308
89.1078
90.7692
60.4401
769947677876
97.4359
ckim-vqsrINDELD6_15map_l100_m0_e0het
94.4000
98.3333
90.7692
93.0851
5915961
16.6667
gduggal-bwavardSNP*map_l125_m2_e1het
94.2043
97.9082
90.7704
83.1773
29020620286782916165
5.6584
mlin-fermikitINDELI6_15HG002complexvarhet
91.0577
91.3376
90.7795
57.5294
21512042166220217
98.6364
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
88.0678
85.5096
90.7838
68.5024
1074182105410748
44.8598
mlin-fermikitSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
94.9504
99.5147
90.7864
82.3867
3896193902396320
80.8081
gduggal-bwavardINDELI1_5map_l125_m2_e1het
94.3638
98.2283
90.7919
91.5103
49994935022
44.0000
jli-customINDELD6_15HG002compoundhethet
93.6150
96.6121
90.7982
65.4935
827298198381
97.5904
qzeng-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
86.2959
82.2171
90.8006
44.5699
32046937531763673
88.2045
gduggal-bwavardINDEL*HG002complexvar*
90.6853
90.5690
90.8018
55.4471
6968272566862869525563
80.0201
eyeh-varpipeINDELI6_15lowcmp_SimpleRepeat_homopolymer_6to10het
85.4239
80.6452
90.8046
75.2137
50121581616
100.0000
hfeng-pmm3INDELD16_PLUSmap_l100_m1_e0*
90.8046
90.8046
90.8046
92.7980
7987982
25.0000
ckim-gatkINDELD1_5map_l125_m1_e0het
94.7425
99.0358
90.8060
91.1611
7197721734
5.4795
gduggal-snapvardSNPtimap_l100_m1_e0het
93.5196
96.3997
90.8067
76.8858
288641078286152897247
8.5261
gduggal-snapvardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
17.8608
9.9044
90.8088
60.0587
37333932472525
100.0000
gduggal-snapvardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
17.8608
9.9044
90.8088
60.0587
37333932472525
100.0000
ltrigg-rtg1INDELC1_5*het
89.8401
88.8889
90.8120
96.3931
81425431
2.3256
gduggal-snapvardSNP*map_l125_m1_e0*
93.5846
96.5275
90.8158
77.9328
437531574431824367333
7.6254
asubramanian-gatkINDELI1_5map_l150_m0_e0het
87.2549
83.9623
90.8163
95.3356
89178990
0.0000
eyeh-varpipeSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
95.0884
99.7815
90.8168
71.4761
1827417901814
2.2099
eyeh-varpipeINDEL*lowcmp_SimpleRepeat_triTR_11to50*
89.7154
88.6381
90.8193
44.6755
596876599321004991
98.7052
dgrover-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
95.1899
100.0000
90.8213
67.7067
18801881918
94.7368
egarrison-hhgaINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
83.1419
76.6600
90.8213
72.4184
3811163763825
65.7895
astatham-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
95.1899
100.0000
90.8213
67.6056
18801881918
94.7368
ckim-dragenINDEL*map_l250_m2_e0het
92.7521
94.7619
90.8257
96.6436
19911198202
10.0000