PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
45251-45300 / 86044 show all | |||||||||||||||
| gduggal-bwavard | INDEL | I1_5 | map_l125_m2_e0 | het | 94.2428 | 98.1891 | 90.6015 | 91.4662 | 488 | 9 | 482 | 50 | 22 | 44.0000 | |
| eyeh-varpipe | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 71.1860 | 58.6207 | 90.6077 | 99.6597 | 51 | 36 | 328 | 34 | 30 | 88.2353 | |
| jlack-gatk | SNP | ti | map_l150_m2_e0 | het | 94.5791 | 98.9054 | 90.6154 | 86.2755 | 12740 | 141 | 12736 | 1319 | 117 | 8.8704 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 79.1116 | 70.1992 | 90.6162 | 65.8002 | 2855 | 1212 | 2897 | 300 | 268 | 89.3333 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 93.5778 | 96.7372 | 90.6183 | 55.9107 | 1601 | 54 | 1700 | 176 | 163 | 92.6136 | |
| jlack-gatk | SNP | ti | map_l150_m2_e1 | het | 94.5873 | 98.9166 | 90.6210 | 86.3363 | 12874 | 141 | 12870 | 1332 | 118 | 8.8589 | |
| gduggal-bwavard | INDEL | D1_5 | map_l100_m2_e1 | * | 92.7581 | 94.9974 | 90.6219 | 86.9648 | 1842 | 97 | 1807 | 187 | 51 | 27.2727 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 68.4366 | 54.9763 | 90.6250 | 82.2960 | 116 | 95 | 116 | 12 | 11 | 91.6667 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 95.0820 | 100.0000 | 90.6250 | 75.3846 | 16 | 0 | 29 | 3 | 1 | 33.3333 | |
| jlack-gatk | SNP | ti | map_l100_m2_e0 | hetalt | 93.5484 | 96.6667 | 90.6250 | 83.5897 | 29 | 1 | 29 | 3 | 3 | 100.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l100_m2_e1 | * | 90.1554 | 89.6907 | 90.6250 | 93.3194 | 87 | 10 | 87 | 9 | 2 | 22.2222 | |
| ckim-vqsr | INDEL | D1_5 | map_l250_m2_e0 | * | 92.5532 | 94.5652 | 90.6250 | 97.1080 | 174 | 10 | 174 | 18 | 1 | 5.5556 | |
| eyeh-varpipe | INDEL | C1_5 | map_l100_m0_e0 | * | 0.0000 | 0.0000 | 90.6250 | 96.3387 | 0 | 0 | 29 | 3 | 1 | 33.3333 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 81.5179 | 74.0741 | 90.6250 | 67.6768 | 60 | 21 | 58 | 6 | 2 | 33.3333 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 93.7284 | 97.0320 | 90.6425 | 82.6718 | 850 | 26 | 649 | 67 | 66 | 98.5075 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 76.0659 | 65.5275 | 90.6435 | 34.5437 | 2416 | 1271 | 2451 | 253 | 251 | 99.2095 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 93.2767 | 96.0630 | 90.6475 | 74.0187 | 122 | 5 | 126 | 13 | 7 | 53.8462 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 94.7368 | 99.2126 | 90.6475 | 53.5117 | 126 | 1 | 126 | 13 | 12 | 92.3077 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 94.7368 | 99.2126 | 90.6475 | 53.5117 | 126 | 1 | 126 | 13 | 12 | 92.3077 | |
| ghariani-varprowl | INDEL | D1_5 | * | * | 89.8931 | 89.1478 | 90.6510 | 61.1738 | 130819 | 15925 | 130678 | 13477 | 11237 | 83.3791 | |
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 94.7282 | 99.1860 | 90.6540 | 71.0721 | 3899 | 32 | 3909 | 403 | 1 | 0.2481 | |
| gduggal-snapplat | INDEL | * | HG002complexvar | homalt | 81.8252 | 74.5588 | 90.6609 | 60.0040 | 20151 | 6876 | 21619 | 2227 | 779 | 34.9798 | |
| jlack-gatk | SNP | tv | map_l150_m2_e0 | * | 94.5181 | 98.7142 | 90.6642 | 84.3431 | 11209 | 146 | 11207 | 1154 | 67 | 5.8059 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 92.8218 | 95.0820 | 90.6667 | 66.3677 | 58 | 3 | 68 | 7 | 6 | 85.7143 | |
| egarrison-hhga | INDEL | D6_15 | map_l100_m2_e0 | het | 94.4089 | 98.4733 | 90.6667 | 87.1023 | 129 | 2 | 136 | 14 | 9 | 64.2857 | |
| gduggal-bwavard | INDEL | D1_5 | map_l100_m2_e0 | * | 92.8526 | 95.1436 | 90.6694 | 86.8647 | 1822 | 93 | 1788 | 184 | 50 | 27.1739 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 91.8070 | 92.9697 | 90.6730 | 69.1101 | 767 | 58 | 768 | 79 | 66 | 83.5443 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 91.8070 | 92.9697 | 90.6730 | 69.1101 | 767 | 58 | 768 | 79 | 66 | 83.5443 | |
| ckim-vqsr | INDEL | D1_5 | map_l250_m2_e1 | * | 92.5926 | 94.5946 | 90.6736 | 97.1634 | 175 | 10 | 175 | 18 | 1 | 5.5556 | |
| gduggal-snapfb | INDEL | D1_5 | map_l250_m1_e0 | het | 93.4498 | 96.3964 | 90.6780 | 93.2610 | 107 | 4 | 107 | 11 | 1 | 9.0909 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 80.7025 | 72.6989 | 90.6863 | 50.9615 | 466 | 175 | 185 | 19 | 19 | 100.0000 | |
| ghariani-varprowl | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 94.4227 | 98.4802 | 90.6863 | 72.2353 | 17301 | 267 | 17390 | 1786 | 11 | 0.6159 | |
| cchapple-custom | INDEL | * | map_l150_m0_e0 | het | 93.0816 | 95.6012 | 90.6915 | 92.2394 | 326 | 15 | 341 | 35 | 5 | 14.2857 | |
| gduggal-snapvard | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 93.8195 | 97.1685 | 90.6935 | 51.4915 | 7241 | 211 | 7153 | 734 | 47 | 6.4033 | |
| jmaeng-gatk | INDEL | * | map_l125_m0_e0 | het | 94.0273 | 97.6150 | 90.6940 | 93.8779 | 573 | 14 | 575 | 59 | 2 | 3.3898 | |
| anovak-vg | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 92.5559 | 94.4948 | 90.6950 | 66.9104 | 2918 | 170 | 3119 | 320 | 136 | 42.5000 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 80.2083 | 71.8944 | 90.6965 | 69.6512 | 3594 | 1405 | 3646 | 374 | 325 | 86.8984 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 80.2083 | 71.8944 | 90.6965 | 69.6512 | 3594 | 1405 | 3646 | 374 | 325 | 86.8984 | |
| gduggal-snapfb | INDEL | I6_15 | map_l125_m1_e0 | * | 81.2500 | 73.5849 | 90.6977 | 82.0084 | 39 | 14 | 39 | 4 | 3 | 75.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l125_m2_e0 | * | 81.2500 | 73.5849 | 90.6977 | 84.4765 | 39 | 14 | 39 | 4 | 3 | 75.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l125_m2_e1 | * | 81.2500 | 73.5849 | 90.6977 | 85.1724 | 39 | 14 | 39 | 4 | 3 | 75.0000 | |
| gduggal-snapfb | SNP | tv | tech_badpromoters | homalt | 95.1220 | 100.0000 | 90.6977 | 67.1756 | 39 | 0 | 39 | 4 | 1 | 25.0000 | |
| gduggal-snapfb | INDEL | D1_5 | map_l250_m2_e0 | het | 93.6000 | 96.6942 | 90.6977 | 93.6233 | 117 | 4 | 117 | 12 | 1 | 8.3333 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 47.2727 | 31.9672 | 90.6977 | 87.2024 | 39 | 83 | 39 | 4 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D6_15 | map_l150_m1_e0 | het | 95.1220 | 100.0000 | 90.6977 | 95.4974 | 39 | 0 | 39 | 4 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D6_15 | map_l100_m0_e0 | het | 93.5871 | 96.6667 | 90.6977 | 87.0091 | 58 | 2 | 78 | 8 | 3 | 37.5000 | |
| mlin-fermikit | INDEL | D16_PLUS | HG002complexvar | * | 88.7656 | 86.9142 | 90.6977 | 68.5511 | 1428 | 215 | 1443 | 148 | 132 | 89.1892 | |
| jlack-gatk | SNP | tv | map_l150_m2_e1 | * | 94.5415 | 98.7220 | 90.7006 | 84.3649 | 11355 | 147 | 11353 | 1164 | 68 | 5.8419 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 85.8273 | 81.4433 | 90.7101 | 41.4412 | 2844 | 648 | 7128 | 730 | 664 | 90.9589 | |
| gduggal-bwavard | SNP | * | map_l125_m2_e0 | het | 94.1644 | 97.8921 | 90.7102 | 83.1354 | 28700 | 618 | 28366 | 2905 | 164 | 5.6454 | |