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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
45201-45250 / 86044 show all
eyeh-varpipeINDELD1_5map_l125_m2_e0hetalt
72.1519
60.0000
90.4762
95.0237
961921
50.0000
eyeh-varpipeINDELD1_5map_l125_m2_e1hetalt
72.1519
60.0000
90.4762
95.1501
961921
50.0000
cchapple-customINDELD6_15map_l250_m1_e0*
95.0000
100.0000
90.4762
95.4936
1801920
0.0000
gduggal-bwavardSNP*map_l125_m1_e0het
94.0558
97.9149
90.4894
82.0185
27800592274782888162
5.6094
mlin-fermikitINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50*
88.3125
86.2357
90.4918
71.6894
8271328288768
78.1609
ckim-gatkINDEL*map_l150_m2_e1het
94.3211
98.4848
90.4950
93.9981
91014914966
6.2500
ciseli-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
92.5926
94.7867
90.4977
51.4286
200112002119
90.4762
egarrison-hhgaINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50homalt
91.5332
92.5926
90.4977
62.7319
200162002115
71.4286
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
84.0573
78.4689
90.5028
57.9812
164451621712
70.5882
gduggal-bwavardINDELI1_5map_sirenhet
94.0644
97.9179
90.5028
86.3515
1646351620170113
66.4706
gduggal-snapfbINDELD6_15HG002complexvar*
75.6069
64.9189
90.5077
47.3259
344218603423359338
94.1504
qzeng-customSNPtvmap_l250_m2_e1het
78.9288
69.9746
90.5109
96.1912
13755901364143116
81.1189
bgallagher-sentieonINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
94.5362
98.9362
90.5109
61.6962
74487447878
100.0000
gduggal-bwafbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
82.2424
75.3576
90.5117
53.1553
458414995590586545
93.0034
ndellapenna-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
93.6456
97.0042
90.5118
51.1256
229971229924185
35.2697
ghariani-varprowlINDELI1_5map_l125_m1_e0het
94.1757
98.1481
90.5123
91.5531
47794775017
34.0000
ghariani-varprowlINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
86.2429
82.3474
90.5252
56.5548
8771888799263
68.4783
jlack-gatkINDELD1_5func_cdshet
95.0276
100.0000
90.5263
62.0000
8508690
0.0000
ndellapenna-hhgaINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
93.5800
96.8468
90.5263
70.9302
430144304540
88.8889
ckim-isaacINDEL*lowcmp_SimpleRepeat_diTR_11to50het
91.9145
93.3439
90.5282
50.5104
1471110491400214651126
76.8601
jlack-gatkSNPtimap_l250_m1_e0*
94.0942
97.9472
90.5329
92.4177
448594448546943
9.1684
qzeng-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
91.8514
93.2059
90.5357
48.9295
878644276447379
84.7875
ndellapenna-hhgaINDELD6_15map_sirenhet
94.0545
97.8571
90.5363
84.7816
27462873016
53.3333
ciseli-customSNPtvmap_l100_m1_e0homalt
89.0533
87.6147
90.5399
62.3935
792311207915827623
75.3325
jlack-gatkINDELD6_15segdup*
92.8571
95.2880
90.5473
94.7561
1829182195
26.3158
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
93.3436
96.3164
90.5489
40.3596
71122726879718641
89.2758
gduggal-bwavardSNPtvmap_l150_m2_e1*
94.1240
97.9830
90.5575
83.2923
1127023211240117251
4.3515
qzeng-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
92.9598
95.4921
90.5582
61.3692
2910613745945661993476
56.0736
qzeng-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
92.9598
95.4921
90.5582
61.3692
2910613745945661993476
56.0736
jlack-gatkINDELD6_15map_l100_m2_e1*
92.3351
94.1818
90.5594
88.7090
25916259275
18.5185
asubramanian-gatkINDELD1_5map_l125_m0_e0het
89.7661
88.9855
90.5605
92.0254
30738307321
3.1250
ciseli-customSNPtvmap_l100_m2_e1homalt
89.1763
87.8306
90.5639
64.9644
817011328158850639
75.1765
ciseli-customSNPtvmap_l100_m2_e0homalt
89.1677
87.8120
90.5658
64.9670
809111238083842633
75.1781
hfeng-pmm2INDELI16_PLUSmap_sirenhet
94.1176
97.9592
90.5660
90.9247
4814850
0.0000
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
88.7453
86.9963
90.5660
76.6520
475714805032
64.0000
bgallagher-sentieonINDELI16_PLUSmap_sirenhet
94.1176
97.9592
90.5660
91.6667
4814850
0.0000
qzeng-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
92.1119
93.7088
90.5685
58.7145
18471245608584448
76.7123
qzeng-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
92.1119
93.7088
90.5685
58.7145
18471245608584448
76.7123
gduggal-snapplatSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
92.7794
95.0997
90.5697
78.5117
281414528142936
2.0478
egarrison-hhgaINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
94.1721
98.0713
90.5711
70.5632
473409314830750294714
93.7363
qzeng-customINDEL*map_l100_m0_e0*
82.0840
75.0480
90.5759
91.5253
1173390155716236
22.2222
eyeh-varpipeSNPtvmap_l125_m0_e0het
94.8919
99.6364
90.5787
80.4588
43851643364519
1.9956
ckim-isaacINDELI6_15lowcmp_SimpleRepeat_homopolymer_6to10*
84.9618
80.0000
90.5797
79.6460
12431125132
15.3846
dgrover-gatkINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200homalt
94.3396
98.4252
90.5797
53.8462
12521251312
92.3077
gduggal-snapfbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
81.2553
73.6695
90.5826
44.2627
818129242068215132
61.3953
ndellapenna-hhgaINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331*
86.1301
82.0915
90.5865
80.5712
1256274125113079
60.7692
ndellapenna-hhgaINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
86.1301
82.0915
90.5865
80.5712
1256274125113079
60.7692
hfeng-pmm2INDEL*HG002compoundhethet
86.3875
82.5598
90.5872
78.6150
33807143147327317
96.9419
ckim-isaacINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331*
71.7619
59.4118
90.5941
73.3930
9096219159549
51.5789
ckim-isaacINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
71.7619
59.4118
90.5941
73.3930
9096219159549
51.5789