PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 900 901 902 903 904 905 906 907 908 ... 1720 1721 » 45151-45200 / 86044 show all
ghariani-varprowl	INDEL	D1_5	segdup	*	91.2316	92.0218	90.4550	95.5776	1015	88	1014	107	65	60.7477
gduggal-bwavard	SNP	tv	map_l150_m2_e0	*	94.0699	97.9833	90.4572	83.2501	11126	229	11100	1171	50	4.2699
gduggal-snapplat	SNP	tv	map_l250_m2_e1	het	86.0422	82.0356	90.4602	95.1420	1612	353	1612	170	70	41.1765
jmaeng-gatk	INDEL	*	segdup	het	94.5277	98.9768	90.4613	96.5263	1451	15	1451	153	2	1.3072
jlack-gatk	SNP	tv	map_l150_m1_e0	*	94.3885	98.6712	90.4622	83.2378	10767	145	10765	1135	67	5.9031
mlin-fermikit	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	92.3449	94.3042	90.4654	62.2051	1606	97	1594	168	164	97.6190
qzeng-custom	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	91.7774	93.1267	90.4666	45.7994	691	51	4033	425	374	88.0000
ckim-isaac	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	92.6668	94.9700	90.4727	59.4634	1265	67	1244	131	94	71.7557
jpowers-varprowl	INDEL	*	HG002complexvar	het	92.4718	94.5577	90.4760	57.5873	43697	2515	43680	4598	4462	97.0422
ltrigg-rtg2	INDEL	I16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	homalt	91.5663	92.6829	90.4762	73.2484	38	3	38	4	4	100.0000
ltrigg-rtg1	SNP	tv	lowcmp_SimpleRepeat_diTR_51to200	*	80.8511	73.0769	90.4762	94.8655	19	7	19	2	1	50.0000
ndellapenna-hhga	INDEL	D6_15	map_l125_m2_e0	het	93.0501	95.7746	90.4762	89.6552	68	3	76	8	4	50.0000
ndellapenna-hhga	INDEL	D6_15	map_l125_m2_e1	het	93.0501	95.7746	90.4762	89.8673	68	3	76	8	4	50.0000
rpoplin-dv42	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	92.1212	93.8272	90.4762	75.3666	76	5	76	8	7	87.5000
rpoplin-dv42	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	84.4444	79.1667	90.4762	80.0000	19	5	19	2	2	100.0000
rpoplin-dv42	INDEL	I6_15	map_l150_m1_e0	*	82.6087	76.0000	90.4762	93.9828	19	6	19	2	2	100.0000
rpoplin-dv42	INDEL	I6_15	map_l150_m2_e0	*	82.6087	76.0000	90.4762	94.6154	19	6	19	2	2	100.0000
rpoplin-dv42	INDEL	D16_PLUS	map_l100_m1_e0	het	86.3636	82.6087	90.4762	90.4328	38	8	38	4	2	50.0000
raldana-dualsentieon	INDEL	D16_PLUS	map_l125_m1_e0	het	92.6829	95.0000	90.4762	94.2308	19	1	19	2	0	0.0000
raldana-dualsentieon	INDEL	D16_PLUS	map_l125_m2_e0	het	92.6829	95.0000	90.4762	95.1389	19	1	19	2	0	0.0000
raldana-dualsentieon	INDEL	D16_PLUS	map_l125_m2_e1	het	92.6829	95.0000	90.4762	95.2381	19	1	19	2	0	0.0000
jlack-gatk	INDEL	I16_PLUS	map_siren	homalt	90.4762	90.4762	90.4762	95.1276	19	2	19	2	1	50.0000
jlack-gatk	INDEL	D16_PLUS	map_l125_m1_e0	het	92.6829	95.0000	90.4762	97.1583	19	1	19	2	0	0.0000
jlack-gatk	INDEL	D16_PLUS	map_l125_m2_e0	het	92.6829	95.0000	90.4762	97.6000	19	1	19	2	0	0.0000
jlack-gatk	INDEL	D16_PLUS	map_l125_m2_e1	het	92.6829	95.0000	90.4762	97.6510	19	1	19	2	0	0.0000
jlack-gatk	INDEL	D1_5	tech_badpromoters	*	95.0000	100.0000	90.4762	48.7805	19	0	19	2	0	0.0000
hfeng-pmm3	INDEL	D16_PLUS	map_l125_m2_e0	het	92.6829	95.0000	90.4762	95.6790	19	1	19	2	0	0.0000
hfeng-pmm3	INDEL	D16_PLUS	map_l125_m2_e1	het	92.6829	95.0000	90.4762	95.7831	19	1	19	2	0	0.0000
hfeng-pmm3	INDEL	I6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	93.4426	96.6102	90.4762	76.4045	57	2	57	6	6	100.0000
hfeng-pmm3	INDEL	D16_PLUS	map_l125_m1_e0	het	92.6829	95.0000	90.4762	95.0000	19	1	19	2	0	0.0000
hfeng-pmm2	INDEL	*	lowcmp_AllRepeats_gt200bp_gt95identity_merged	*	92.6829	95.0000	90.4762	99.2519	19	1	19	2	0	0.0000
gduggal-snapfb	INDEL	D6_15	map_l150_m1_e0	*	80.5600	72.6027	90.4762	87.9771	53	20	57	6	5	83.3333
gduggal-snapfb	INDEL	D6_15	map_l150_m1_e0	het	81.6296	74.3590	90.4762	83.5938	29	10	38	4	3	75.0000
eyeh-varpipe	INDEL	D6_15	map_l125_m0_e0	*	87.7092	85.1064	90.4762	90.8828	40	7	57	6	6	100.0000
eyeh-varpipe	INDEL	I6_15	map_l150_m1_e0	homalt	88.0309	85.7143	90.4762	85.3147	6	1	19	2	2	100.0000
gduggal-bwavard	INDEL	D6_15	map_l250_m2_e0	*	88.3721	86.3636	90.4762	97.1925	19	3	19	2	1	50.0000
gduggal-bwavard	INDEL	D6_15	map_l250_m2_e1	*	88.3721	86.3636	90.4762	97.2477	19	3	19	2	1	50.0000
gduggal-bwaplat	SNP	*	lowcmp_SimpleRepeat_diTR_51to200	*	60.3175	45.2381	90.4762	98.9340	19	23	19	2	1	50.0000
gduggal-snapfb	INDEL	I6_15	map_l150_m2_e1	*	79.1667	70.3704	90.4762	90.5830	19	8	19	2	2	100.0000
gduggal-snapplat	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	homalt	50.4626	34.9887	90.4762	43.6782	155	288	133	14	11	78.5714
gduggal-snapplat	INDEL	I1_5	func_cds	homalt	83.8633	78.1513	90.4762	30.4636	93	26	95	10	1	10.0000
hfeng-pmm1	INDEL	*	lowcmp_AllRepeats_gt200bp_gt95identity_merged	*	92.6829	95.0000	90.4762	99.2580	19	1	19	2	0	0.0000
egarrison-hhga	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	67.5127	53.8462	90.4762	72.7273	21	18	19	2	2	100.0000
egarrison-hhga	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	67.6759	54.0541	90.4762	58.8235	20	17	19	2	2	100.0000
egarrison-hhga	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	76.7677	66.6667	90.4762	88.3978	18	9	19	2	2	100.0000
dgrover-gatk	INDEL	D16_PLUS	map_l125_m1_e0	het	92.6829	95.0000	90.4762	96.8563	19	1	19	2	0	0.0000
dgrover-gatk	INDEL	D16_PLUS	map_l125_m2_e0	het	92.6829	95.0000	90.4762	97.3384	19	1	19	2	0	0.0000
dgrover-gatk	INDEL	D16_PLUS	map_l125_m2_e1	het	92.6829	95.0000	90.4762	97.4074	19	1	19	2	0	0.0000
egarrison-hhga	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	91.5663	92.6829	90.4762	89.2308	38	3	38	4	4	100.0000
eyeh-varpipe	INDEL	C1_5	map_l125_m0_e0	*	0.0000	0.0000	90.4762	96.7643	0	0	19	2	0	0.0000

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge