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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 899 900 901 902 903 904 905 906 907 ... 1720 1721 » 45101-45150 / 86044 show all
jpowers-varprowl	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	80.1154	71.9755	90.3312	67.7249	2707	1054	2700	289	235	81.3149
jpowers-varprowl	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	80.1154	71.9755	90.3312	67.7249	2707	1054	2700	289	235	81.3149
ckim-gatk	INDEL	*	map_l150_m2_e0	het	94.2693	98.5651	90.3323	93.9690	893	13	897	96	6	6.2500
rpoplin-dv42	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	94.1229	98.2424	90.3349	66.0632	3801	68	3776	404	398	98.5149
gduggal-snapplat	SNP	tv	map_l150_m0_e0	het	88.2289	86.2117	90.3428	90.9621	2451	392	2451	262	132	50.3817
egarrison-hhga	INDEL	D6_15	map_l100_m1_e0	het	94.2063	98.4127	90.3448	86.6236	124	2	131	14	9	64.2857
gduggal-bwaplat	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	68.2119	54.7872	90.3509	80.9683	103	85	103	11	10	90.9091
qzeng-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	89.6438	88.9452	90.3535	42.9428	33712	4190	54335	5801	4069	70.1431
egarrison-hhga	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	91.2797	92.2197	90.3587	46.2002	403	34	403	43	19	44.1860
gduggal-bwavard	INDEL	D1_5	map_l100_m1_e0	*	92.6870	95.1299	90.3665	86.2223	1758	90	1726	184	50	27.1739
jlack-gatk	SNP	*	map_l125_m2_e1	het	94.5222	99.0756	90.3690	83.8291	29366	274	29360	3129	222	7.0949
ciseli-custom	SNP	*	map_siren	het	87.4519	84.7172	90.3691	62.2108	77085	13906	76849	8190	211	2.5763
gduggal-bwafb	INDEL	D16_PLUS	HG002compoundhet	*	82.3584	75.6514	90.3704	28.6893	1771	570	1952	208	208	100.0000
ghariani-varprowl	INDEL	I1_5	map_l100_m2_e0	het	94.1968	98.3607	90.3712	90.4265	780	13	779	83	29	34.9398
gduggal-bwafb	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	85.3531	80.8576	90.3780	61.9856	528	125	526	56	54	96.4286
gduggal-bwafb	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	94.7163	99.4919	90.3781	51.0003	5091	26	5091	542	540	99.6310
ckim-dragen	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	94.8012	99.6785	90.3790	71.4642	310	1	310	33	33	100.0000
bgallagher-sentieon	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	94.4810	98.9726	90.3794	82.0961	867	9	667	71	69	97.1831
jpowers-varprowl	SNP	ti	map_l250_m0_e0	het	90.9574	91.5418	90.3805	95.3348	855	79	855	91	17	18.6813
ghariani-varprowl	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	94.6036	99.2382	90.3825	74.1987	2475	19	2481	264	1	0.3788
astatham-gatk	INDEL	I16_PLUS	map_siren	het	93.0693	95.9184	90.3846	91.9255	47	2	47	5	0	0.0000
ckim-vqsr	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	94.9495	100.0000	90.3846	67.5000	188	0	188	20	19	95.0000
ckim-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	94.9495	100.0000	90.3846	67.5000	188	0	188	20	19	95.0000
gduggal-snapfb	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	77.4166	67.7028	90.3846	37.1872	4857	2317	658	70	69	98.5714
gduggal-snapfb	INDEL	D6_15	segdup	homalt	91.1852	92.0000	90.3846	91.3333	46	4	47	5	5	100.0000
qzeng-custom	INDEL	D6_15	segdup	homalt	94.9495	100.0000	90.3846	91.3765	50	0	47	5	3	60.0000
ndellapenna-hhga	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	88.1961	86.1111	90.3846	84.8175	93	15	94	10	5	50.0000
qzeng-custom	SNP	tv	map_l250_m2_e0	het	78.8333	69.8969	90.3898	96.1692	1356	584	1345	143	116	81.1189
ckim-gatk	INDEL	*	map_l150_m0_e0	*	94.2458	98.4436	90.3915	94.6603	506	8	508	54	4	7.4074
rpoplin-dv42	INDEL	I6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	87.8389	85.4251	90.3930	78.7175	211	36	207	22	19	86.3636
gduggal-snapfb	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	90.7313	91.0661	90.3989	49.5222	6116	600	6685	710	208	29.2958
jmaeng-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_51to200	het	94.6822	99.3902	90.4000	87.6847	163	1	113	12	10	83.3333
gduggal-bwavard	SNP	ti	map_l100_m0_e0	het	93.7781	97.4183	90.4002	80.9729	13622	361	13532	1437	84	5.8455
gduggal-bwaplat	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	64.6064	50.2642	90.4008	85.4064	856	847	857	91	11	12.0879
ciseli-custom	SNP	*	HG002complexvar	hetalt	70.4724	57.7419	90.4040	39.8176	179	131	179	19	9	47.3684
ciseli-custom	SNP	tv	HG002complexvar	hetalt	70.4724	57.7419	90.4040	39.8176	179	131	179	19	9	47.3684
gduggal-bwafb	INDEL	D16_PLUS	map_siren	het	83.1234	76.9231	90.4110	81.1370	60	18	66	7	6	85.7143
anovak-vg	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	90.6611	90.9091	90.4145	54.4274	340	34	349	37	21	56.7568
jlack-gatk	SNP	ti	map_l150_m1_e0	het	94.4532	98.8682	90.4156	85.3425	12230	140	12226	1296	116	8.9506
gduggal-bwavard	INDEL	D1_5	func_cds	het	94.9721	100.0000	90.4255	45.3488	85	0	85	9	7	77.7778
ndellapenna-hhga	INDEL	D6_15	HG002complexvar	homalt	93.9581	97.7759	90.4272	60.3886	1143	26	1143	121	72	59.5041
ciseli-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	94.9226	99.8834	90.4311	55.1415	857	1	860	91	16	17.5824
gduggal-snapplat	SNP	tv	map_l250_m2_e0	het	85.9616	81.9072	90.4382	95.1114	1589	351	1589	168	70	41.6667
cchapple-custom	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	homalt	93.5361	96.8504	90.4412	37.6147	123	4	123	13	12	92.3077
ndellapenna-hhga	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	91.2758	92.1260	90.4412	74.2424	117	10	123	13	5	38.4615
ghariani-varprowl	INDEL	I1_5	map_l100_m2_e1	het	94.1953	98.2716	90.4437	90.5024	796	14	795	84	29	34.5238
jmaeng-gatk	INDEL	D1_5	map_l150_m0_e0	*	94.0364	97.9239	90.4459	94.1809	283	6	284	30	1	3.3333
mlin-fermikit	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	94.8031	99.5995	90.4474	84.6880	1492	6	1496	158	129	81.6456
jlack-gatk	INDEL	I1_5	map_l100_m0_e0	het	94.1469	98.1595	90.4494	90.9645	320	6	322	34	1	2.9412
eyeh-varpipe	SNP	*	HG002compoundhet	het	94.4229	98.7586	90.4519	56.9085	14002	176	5845	617	93	15.0729

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