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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 897 898 899 900 901 902 903 904 905 ... 1720 1721 » 45001-45050 / 86044 show all
gduggal-bwaplat	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	79.6774	71.3873	90.1460	83.5435	247	99	247	27	5	18.5185
jlack-gatk	SNP	*	map_l125_m1_e0	het	94.3869	99.0455	90.1469	82.7150	28121	271	28115	3073	220	7.1591
ghariani-varprowl	INDEL	I16_PLUS	HG002complexvar	homalt	82.5036	76.0518	90.1515	62.3395	235	74	238	26	26	100.0000
gduggal-bwafb	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	86.3078	82.7751	90.1554	73.0070	173	36	174	19	12	63.1579
egarrison-hhga	INDEL	D6_15	map_siren	het	94.1776	98.5714	90.1587	84.4291	276	4	284	31	19	61.2903
eyeh-varpipe	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	88.9527	87.7778	90.1596	65.0395	553	77	678	74	57	77.0270
ciseli-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	81.7400	74.7573	90.1615	62.2924	616	208	614	67	57	85.0746
gduggal-bwafb	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	85.4009	81.1159	90.1639	84.0314	189	44	110	12	12	100.0000
eyeh-varpipe	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	73.7801	62.4350	90.1639	54.2729	600	361	550	60	48	80.0000
gduggal-snapplat	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	hetalt	21.9561	12.5000	90.1639	55.1471	109	763	110	12	10	83.3333
ndellapenna-hhga	INDEL	D6_15	map_siren	hetalt	75.3022	64.6465	90.1639	76.8061	64	35	55	6	2	33.3333
jpowers-varprowl	INDEL	I1_5	func_cds	het	91.6667	93.2203	90.1639	47.4138	55	4	55	6	6	100.0000
jmaeng-gatk	INDEL	I1_5	map_l250_m1_e0	het	90.9091	91.6667	90.1639	98.1015	55	5	55	6	0	0.0000
asubramanian-gatk	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	92.6261	95.2133	90.1758	75.1797	915	46	872	95	85	89.4737
gduggal-bwavard	SNP	tv	map_l150_m1_e0	*	93.9183	97.9839	90.1767	82.0762	10692	220	10667	1162	50	4.3029
anovak-vg	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	91.3470	92.5462	90.1786	71.2135	1403	113	1414	154	61	39.6104
gduggal-snapvard	SNP	*	map_l100_m2_e1	het	93.3754	96.7973	90.1872	78.6618	45396	1502	44805	4875	376	7.7128
mlin-fermikit	INDEL	D6_15	*	*	87.9258	85.7734	90.1891	52.9541	22380	3712	22421	2439	2392	98.0730
asubramanian-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	94.0166	98.1818	90.1905	68.4305	810	15	947	103	102	99.0291
asubramanian-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	94.0166	98.1818	90.1905	68.4305	810	15	947	103	102	99.0291
ltrigg-rtg1	INDEL	I1_5	HG002compoundhet	homalt	91.5810	93.0091	90.1961	73.3184	306	23	322	35	34	97.1429
ckim-dragen	INDEL	D1_5	map_l250_m0_e0	*	94.8454	100.0000	90.1961	97.3940	46	0	46	5	0	0.0000
dgrover-gatk	INDEL	D1_5	map_l250_m0_e0	*	94.8454	100.0000	90.1961	97.6023	46	0	46	5	0	0.0000
ghariani-varprowl	INDEL	I1_5	map_l125_m2_e0	het	94.0270	98.1891	90.2033	92.2978	488	9	488	53	18	33.9623
jlack-gatk	SNP	*	map_l150_m0_e0	*	93.9698	98.0635	90.2042	86.8496	11799	233	11796	1281	106	8.2748
egarrison-hhga	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	het	91.7104	93.2668	90.2050	72.1800	374	27	396	43	37	86.0465
mlin-fermikit	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	93.5003	97.0335	90.2153	59.9508	8112	248	8086	877	859	97.9475
mlin-fermikit	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	93.5003	97.0335	90.2153	59.9508	8112	248	8086	877	859	97.9475
ndellapenna-hhga	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	93.2488	96.4929	90.2158	52.0822	3054	111	3052	331	137	41.3897
jlack-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	94.6398	99.5152	90.2198	70.6072	821	4	821	89	86	96.6292
jlack-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	94.6398	99.5152	90.2198	70.6072	821	4	821	89	86	96.6292
ckim-dragen	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	*	90.4159	90.6122	90.2204	58.0347	666	69	655	71	68	95.7746
ciseli-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	94.2432	98.6409	90.2208	73.3792	11395	157	11440	1240	455	36.6935
ciseli-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	94.2432	98.6409	90.2208	73.3792	11395	157	11440	1240	455	36.6935
eyeh-varpipe	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	18.7138	10.4396	90.2235	66.4165	247	2119	323	35	30	85.7143
qzeng-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	90.0572	89.8904	90.2247	50.1569	38954	4381	59902	6490	4175	64.3297
jlack-gatk	INDEL	D6_15	map_l125_m2_e0	*	92.6641	95.2381	90.2256	92.2449	120	6	120	13	1	7.6923
qzeng-custom	SNP	*	map_l250_m2_e1	het	76.4225	66.2804	90.2293	96.3549	3489	1775	3463	375	310	82.6667
mlin-fermikit	INDEL	I1_5	map_l125_m2_e1	*	67.6724	54.1379	90.2299	81.0664	471	399	471	51	46	90.1961
mlin-fermikit	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	92.8902	95.7121	90.2299	74.0007	625	28	628	68	67	98.5294
mlin-fermikit	INDEL	I6_15	*	*	85.1815	80.6671	90.2311	47.3715	20024	4799	20108	2177	2161	99.2650
eyeh-varpipe	INDEL	D1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	24.4790	14.1603	90.2314	68.8301	258	1564	351	38	31	81.5789
egarrison-hhga	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	88.5277	86.8852	90.2335	62.7373	424	64	425	46	39	84.7826
ghariani-varprowl	INDEL	I1_5	map_l125_m2_e1	het	94.0622	98.2283	90.2351	92.3365	499	9	499	54	18	33.3333
jlack-gatk	SNP	tv	map_l100_m0_e0	*	94.2911	98.7279	90.2359	79.7630	10943	141	10942	1184	68	5.7432
asubramanian-gatk	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	94.1755	98.4686	90.2411	69.2008	643	10	786	85	83	97.6471
gduggal-bwavard	SNP	tv	map_l100_m0_e0	*	93.8772	97.8167	90.2427	78.7360	10842	242	10821	1170	50	4.2735
eyeh-varpipe	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	55.9476	40.5405	90.2439	86.2416	15	22	37	4	4	100.0000
eyeh-varpipe	INDEL	D6_15	map_l125_m2_e0	het	92.9271	95.7746	90.2439	86.6667	68	3	74	8	8	100.0000
eyeh-varpipe	INDEL	D6_15	map_l125_m2_e1	het	92.9271	95.7746	90.2439	86.9634	68	3	74	8	8	100.0000

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