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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 896 897 898 899 900 901 902 903 904 ... 1720 1721 » 44951-45000 / 86044 show all
ckim-gatk	INDEL	I16_PLUS	map_l125_m2_e0	het	94.7368	100.0000	90.0000	97.0238	9	0	9	1	0	0.0000
ckim-gatk	INDEL	I16_PLUS	map_l125_m2_e1	het	94.7368	100.0000	90.0000	97.0326	9	0	9	1	0	0.0000
ckim-gatk	INDEL	I1_5	map_l250_m0_e0	homalt	94.7368	100.0000	90.0000	96.9880	9	0	9	1	1	100.0000
cchapple-custom	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	0.0000	0.0000	90.0000	93.9024	0	0	9	1	0	0.0000
cchapple-custom	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	0.0000	0.0000	90.0000	98.2487	0	0	9	1	1	100.0000
cchapple-custom	INDEL	I16_PLUS	map_l150_m1_e0	het	94.7368	100.0000	90.0000	95.0980	6	0	9	1	0	0.0000
cchapple-custom	INDEL	I16_PLUS	map_l150_m2_e0	het	94.7368	100.0000	90.0000	95.6710	6	0	9	1	0	0.0000
cchapple-custom	INDEL	I16_PLUS	map_l150_m2_e1	het	94.7368	100.0000	90.0000	95.7265	6	0	9	1	0	0.0000
ciseli-custom	INDEL	I6_15	func_cds	het	52.9412	37.5000	90.0000	41.1765	9	15	9	1	1	100.0000
bgallagher-sentieon	INDEL	I1_5	HG002compoundhet	het	94.0512	98.4706	90.0115	86.3970	837	13	784	87	85	97.7011
gduggal-snapvard	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	93.3922	97.0358	90.0123	67.8126	53982	1649	53380	5923	338	5.7066
ghariani-varprowl	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	94.0874	98.5460	90.0149	70.2400	34904	515	35077	3891	30	0.7710
mlin-fermikit	INDEL	I1_5	map_l125_m2_e0	*	67.2515	53.6756	90.0196	80.9186	460	397	460	51	46	90.1961
gduggal-snapplat	INDEL	D1_5	map_l150_m1_e0	*	83.2414	77.4059	90.0285	94.1859	555	162	632	70	18	25.7143
jlack-gatk	SNP	tv	map_l100_m2_e1	het	94.4530	99.3286	90.0336	81.3037	15831	107	15827	1752	90	5.1370
rpoplin-dv42	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	88.7503	87.5000	90.0369	78.1275	252	36	244	27	25	92.5926
gduggal-bwafb	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	83.8326	78.4242	90.0421	57.6603	647	178	642	71	69	97.1831
gduggal-bwafb	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	83.8326	78.4242	90.0421	57.6603	647	178	642	71	69	97.1831
qzeng-custom	SNP	ti	map_l250_m2_e1	het	74.8760	64.0800	90.0468	96.4938	2114	1185	2117	234	196	83.7607
jlack-gatk	INDEL	D1_5	map_l125_m2_e0	*	94.2098	98.7752	90.0478	89.8856	1129	14	1131	125	6	4.8000
ndellapenna-hhga	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	90.8852	91.7343	90.0517	74.0181	1243	112	1394	154	131	85.0649
qzeng-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	88.7617	87.5000	90.0602	60.8952	252	36	598	66	60	90.9091
gduggal-snapplat	INDEL	D1_5	map_l125_m0_e0	*	83.1468	77.2177	90.0621	94.3416	383	113	435	48	13	27.0833
gduggal-snapplat	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	hetalt	60.5664	45.6229	90.0673	45.8084	4779	5696	4815	531	472	88.8889
ckim-isaac	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	81.6460	74.6599	90.0744	85.4526	1317	447	1452	160	15	9.3750
eyeh-varpipe	SNP	tv	func_cds	*	94.7737	99.9771	90.0850	32.1750	4370	1	4343	478	0	0.0000
jlack-gatk	INDEL	D1_5	map_l125_m2_e1	*	94.2377	98.7900	90.0865	89.9406	1143	14	1145	126	6	4.7619
anovak-vg	INDEL	D6_15	map_siren	homalt	83.4332	77.6923	90.0901	82.2967	101	29	100	11	10	90.9091
jmaeng-gatk	INDEL	*	map_l250_m1_e0	*	92.6752	95.4098	90.0929	97.2306	291	14	291	32	4	12.5000
cchapple-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	93.8667	97.9695	90.0936	51.1619	1158	24	1155	127	117	92.1260
qzeng-custom	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	*	87.2924	84.6591	90.0947	59.0476	1043	189	1046	115	86	74.7826
jpowers-varprowl	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	homalt	55.4033	40.0000	90.0990	78.7815	92	138	91	10	9	90.0000
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	homalt	55.8190	40.4348	90.0990	79.0021	93	137	91	10	9	90.0000
gduggal-bwavard	INDEL	I1_5	HG002complexvar	het	93.6787	97.5535	90.0999	57.7758	17744	445	17310	1902	1663	87.4343
ckim-dragen	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	94.3522	99.0237	90.1015	65.0864	710	7	710	78	76	97.4359
raldana-dualsentieon	INDEL	I1_5	HG002compoundhet	het	88.2507	86.4706	90.1055	86.0431	735	115	683	75	74	98.6667
gduggal-snapfb	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	homalt	90.9276	91.7603	90.1099	64.2202	245	22	246	27	5	18.5185
jlack-gatk	INDEL	D6_15	map_l150_m2_e1	*	93.1818	96.4706	90.1099	93.5825	82	3	82	9	1	11.1111
hfeng-pmm2	SNP	ti	lowcmp_SimpleRepeat_quadTR_51to200	*	85.4167	81.1881	90.1099	93.4106	82	19	82	9	0	0.0000
hfeng-pmm3	INDEL	D16_PLUS	map_l100_m2_e0	*	90.6077	91.1111	90.1099	93.5046	82	8	82	9	2	22.2222
qzeng-custom	SNP	*	map_l250_m2_e0	het	76.2572	66.0955	90.1111	96.3398	3433	1761	3408	374	309	82.6203
ndellapenna-hhga	INDEL	D16_PLUS	*	homalt	92.1150	94.2080	90.1130	60.6404	1594	98	1595	175	104	59.4286
ghariani-varprowl	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	homalt	94.6830	99.7395	90.1145	68.5511	3446	9	3464	380	233	61.3158
jpowers-varprowl	INDEL	*	map_l100_m2_e0	het	91.6929	93.3247	90.1173	87.2972	2153	154	2152	236	191	80.9322
raldana-dualsentieon	INDEL	*	map_l250_m0_e0	*	91.8239	93.5897	90.1235	97.0513	73	5	73	8	0	0.0000
mlin-fermikit	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	het	92.0469	94.0521	90.1255	39.8201	9788	619	9766	1070	1036	96.8224
anovak-vg	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	homalt	83.7423	78.1955	90.1361	42.6621	1040	290	1060	116	85	73.2759
gduggal-snapvard	SNP	*	map_l100_m2_e0	het	93.3360	96.7693	90.1379	78.6381	44900	1499	44319	4849	371	7.6511
gduggal-bwafb	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	81.8128	74.8933	90.1411	58.1664	7544	2529	8942	978	867	88.6503
bgallagher-sentieon	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	94.8171	100.0000	90.1449	70.2842	311	0	311	34	33	97.0588

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