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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 892 893 894 895 896 897 898 899 900 ... 1720 1721 » 44751-44800 / 86044 show all
rpoplin-dv42	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	87.8155	85.8877	89.8319	60.6862	1132	186	1122	127	125	98.4252
gduggal-snapfb	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	80.3731	72.7114	89.8397	50.0523	11668	4379	12441	1407	1388	98.6496
ciseli-custom	SNP	ti	map_l125_m2_e0	homalt	88.6940	87.5770	89.8399	67.8832	9947	1411	9930	1123	909	80.9439
ckim-isaac	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	84.3015	79.4055	89.8409	68.3211	748	194	734	83	52	62.6506
jpowers-varprowl	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	94.4831	99.6276	89.8438	81.7577	2408	9	2415	273	131	47.9853
ckim-isaac	INDEL	I16_PLUS	*	het	78.5832	69.8308	89.8441	60.3038	1898	820	1902	215	129	60.0000
gduggal-bwavard	SNP	ti	map_l150_m2_e0	het	93.6309	97.7486	89.8461	85.7790	12591	290	12494	1412	84	5.9490
hfeng-pmm3	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	92.1557	94.5865	89.8467	85.0129	629	36	469	53	47	88.6792
jlack-gatk	INDEL	*	map_l100_m0_e0	*	93.6372	97.7607	89.8474	89.5254	1528	35	1531	173	12	6.9364
jlack-gatk	SNP	tv	map_l100_m1_e0	het	94.3447	99.3060	89.8556	80.1334	15310	107	15306	1728	90	5.2083
gduggal-snapfb	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	90.1510	90.4439	89.8599	72.3577	3199	338	3208	362	144	39.7790
gduggal-bwafb	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	63.9411	49.6269	89.8601	54.0931	266	270	257	29	29	100.0000
bgallagher-sentieon	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	94.2519	99.0946	89.8604	65.5446	2189	20	2189	247	241	97.5709
ckim-gatk	INDEL	D1_5	map_l100_m0_e0	het	94.1262	98.8156	89.8618	90.2908	584	7	585	66	3	4.5455
gduggal-snapfb	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	62.5767	48.0000	89.8678	23.0508	312	338	204	23	21	91.3043
ciseli-custom	SNP	ti	map_l125_m2_e1	homalt	88.7321	87.6244	89.8682	67.8893	10040	1418	10023	1130	915	80.9735
mlin-fermikit	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	*	80.3677	72.6804	89.8734	76.7647	282	106	284	32	30	93.7500
eyeh-varpipe	INDEL	D6_15	map_l125_m1_e0	het	93.2430	96.8750	89.8734	86.2609	62	2	71	8	8	100.0000
jlack-gatk	INDEL	D6_15	map_l150_m1_e0	*	93.4211	97.2603	89.8734	93.5668	71	2	71	8	0	0.0000
gduggal-snapplat	SNP	*	tech_badpromoters	het	91.0256	92.2078	89.8734	77.4286	71	6	71	8	0	0.0000
jpowers-varprowl	INDEL	*	map_l100_m2_e1	het	91.5148	93.2138	89.8765	87.3477	2184	159	2184	246	199	80.8943
eyeh-varpipe	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	93.4354	97.2868	89.8773	59.4527	251	7	293	33	32	96.9697
jlack-gatk	INDEL	I1_5	map_l150_m1_e0	het	93.4527	97.3244	89.8773	93.2797	291	8	293	33	2	6.0606
ckim-dragen	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	94.5750	99.7860	89.8811	59.7231	2798	6	2798	315	314	99.6825
gduggal-snapplat	INDEL	D1_5	map_l150_m2_e0	*	83.8096	78.5059	89.8817	94.3466	599	164	684	77	18	23.3766
gduggal-bwavard	SNP	ti	map_l150_m2_e1	het	93.6574	97.7641	89.8818	85.8419	12724	291	12623	1421	85	5.9817
gduggal-bwavard	SNP	*	map_l125_m0_e0	*	93.5292	97.4826	89.8840	82.4074	18897	488	18668	2101	98	4.6645
ciseli-custom	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	92.4417	95.1488	89.8844	58.8124	15632	797	15630	1759	720	40.9323
gduggal-bwafb	INDEL	I6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	65.0432	50.9569	89.8925	58.2960	426	410	418	47	47	100.0000
ghariani-varprowl	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	94.0441	98.5965	89.8936	70.5698	843	12	845	95	0	0.0000
ckim-dragen	INDEL	*	map_l250_m1_e0	het	92.0043	94.2105	89.8990	96.4744	179	11	178	20	2	10.0000
dgrover-gatk	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	93.3545	97.0864	89.8990	74.7771	933	28	890	100	90	90.0000
ciseli-custom	SNP	tv	segdup	het	93.4710	97.3331	89.9038	92.8401	5146	141	5138	577	16	2.7730
ckim-gatk	INDEL	*	map_l150_m1_e0	het	93.9968	98.4795	89.9044	93.5685	842	13	846	95	6	6.3158
ndellapenna-hhga	INDEL	D16_PLUS	HG002complexvar	*	84.9902	80.5843	89.9058	63.0348	1324	319	1336	150	106	70.6667
jlack-gatk	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	92.4559	95.1485	89.9115	78.4139	3844	196	3556	399	354	88.7218
qzeng-custom	SNP	tv	map_l250_m1_e0	het	77.8994	68.7185	89.9116	96.1828	1228	559	1221	137	110	80.2920
jmaeng-gatk	INDEL	D1_5	map_l150_m2_e1	het	94.0832	98.6590	89.9130	93.3633	515	7	517	58	4	6.8966
gduggal-bwafb	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	homalt	78.6765	69.9346	89.9160	64.3713	107	46	107	12	10	83.3333
anovak-vg	INDEL	D1_5	*	het	92.1131	94.4127	89.9228	55.4448	82681	4893	86771	9724	6623	68.1098
qzeng-custom	SNP	ti	map_l250_m2_e0	het	74.6630	63.8291	89.9265	96.4842	2077	1177	2080	233	195	83.6910
mlin-fermikit	INDEL	*	map_l150_m0_e0	het	52.0833	36.6569	89.9281	85.9312	125	216	125	14	4	28.5714
gduggal-bwafb	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	78.5045	69.6510	89.9365	50.9342	918	400	992	111	111	100.0000
gduggal-bwaplat	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	57.2505	41.9890	89.9408	89.1458	152	210	152	17	17	100.0000
qzeng-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	92.8865	96.0317	89.9408	90.7338	1694	70	1824	204	45	22.0588
hfeng-pmm2	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	91.4127	92.9323	89.9420	85.4816	618	47	465	52	42	80.7692
gduggal-bwafb	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	70.3339	57.7444	89.9436	58.0772	384	281	957	107	104	97.1963
gduggal-snapplat	SNP	tv	map_l250_m1_e0	het	85.2855	81.0856	89.9441	94.8591	1449	338	1449	162	67	41.3580
ckim-vqsr	INDEL	D1_5	map_l250_m1_e0	*	92.0000	94.1520	89.9441	96.9501	161	10	161	18	1	5.5556
jlack-gatk	SNP	tv	map_l100_m2_e0	het	94.4020	99.3218	89.9466	81.2769	15670	107	15666	1751	90	5.1399

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