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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 888 889 890 891 892 893 894 895 896 ... 1720 1721 » 44551-44600 / 86044 show all
gduggal-bwavard	SNP	tv	lowcmp_SimpleRepeat_diTR_51to200	*	75.5556	65.3846	89.4737	97.1386	17	9	17	2	0	0.0000
gduggal-snapfb	INDEL	*	segdup	hetalt	81.3718	74.6154	89.4737	97.2915	97	33	34	4	2	50.0000
gduggal-snapfb	INDEL	D6_15	map_l100_m0_e0	homalt	79.0698	70.8333	89.4737	91.9831	17	7	17	2	2	100.0000
eyeh-varpipe	INDEL	C1_5	map_l100_m2_e1	*	0.0000	0.0000	89.4737	95.5582	0	0	68	8	3	37.5000
eyeh-varpipe	INDEL	C6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	0.0000	0.0000	89.4737	96.8543	0	0	17	2	2	100.0000
eyeh-varpipe	INDEL	D1_5	tech_badpromoters	*	89.4737	89.4737	89.4737	42.4242	17	2	17	2	2	100.0000
ckim-vqsr	INDEL	D16_PLUS	map_l150_m2_e0	*	94.4444	100.0000	89.4737	97.8604	17	0	17	2	0	0.0000
ckim-vqsr	INDEL	D16_PLUS	map_l150_m2_e1	*	91.8919	94.4444	89.4737	97.9006	17	1	17	2	0	0.0000
egarrison-hhga	INDEL	*	lowcmp_AllRepeats_gt200bp_gt95identity_merged	*	84.4720	80.0000	89.4737	99.9555	16	4	17	2	2	100.0000
ckim-vqsr	INDEL	I16_PLUS	map_l100_m2_e0	het	91.8919	94.4444	89.4737	95.6522	17	1	17	2	0	0.0000
ckim-vqsr	INDEL	I16_PLUS	map_l100_m2_e1	het	91.8919	94.4444	89.4737	95.6720	17	1	17	2	0	0.0000
cchapple-custom	INDEL	D6_15	map_l250_m2_e0	het	94.4444	100.0000	89.4737	95.6221	14	0	17	2	0	0.0000
cchapple-custom	INDEL	D6_15	map_l250_m2_e1	het	94.4444	100.0000	89.4737	95.7207	14	0	17	2	0	0.0000
ckim-dragen	INDEL	I16_PLUS	map_l100_m1_e0	het	91.8919	94.4444	89.4737	93.6242	17	1	17	2	0	0.0000
ckim-dragen	INDEL	I16_PLUS	map_l100_m2_e0	het	91.8919	94.4444	89.4737	94.6328	17	1	17	2	0	0.0000
ckim-dragen	INDEL	I16_PLUS	map_l100_m2_e1	het	91.8919	94.4444	89.4737	94.7075	17	1	17	2	0	0.0000
ckim-gatk	INDEL	I16_PLUS	map_l100_m2_e0	het	91.8919	94.4444	89.4737	95.6522	17	1	17	2	0	0.0000
ckim-gatk	INDEL	I16_PLUS	map_l100_m2_e1	het	91.8919	94.4444	89.4737	95.6720	17	1	17	2	0	0.0000
gduggal-snapvard	SNP	tv	map_l125_m1_e0	*	93.0563	96.9343	89.4767	78.3907	15525	491	15475	1820	120	6.5934
qzeng-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	91.8743	94.4038	89.4769	44.0923	13799	818	39955	4699	3029	64.4605
gduggal-snapfb	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	*	85.4037	81.6845	89.4777	43.9514	29890	6702	33045	3886	2450	63.0468
eyeh-varpipe	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	94.4475	100.0000	89.4792	73.5318	914	0	859	101	1	0.9901
ciseli-custom	SNP	ti	map_l100_m2_e0	*	86.2627	83.2663	89.4829	71.0430	40768	8193	40704	4784	1327	27.7383
jlack-gatk	SNP	*	map_l250_m2_e0	*	93.5078	97.9074	89.4865	92.8768	7720	165	7720	907	67	7.3870
gduggal-snapfb	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	69.8922	57.3374	89.4866	50.3641	1516	1128	366	43	39	90.6977
gduggal-snapplat	INDEL	*	map_l100_m0_e0	*	80.3694	72.9367	89.4891	92.8627	1140	423	1226	144	20	13.8889
ndellapenna-hhga	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	92.7491	96.2553	89.4894	50.3947	2699	105	2699	317	129	40.6940
ckim-gatk	INDEL	*	map_l125_m0_e0	het	93.6867	98.2964	89.4900	93.6438	577	10	579	68	2	2.9412
asubramanian-gatk	INDEL	*	map_l250_m2_e1	*	86.7031	84.0841	89.4904	99.1381	280	53	281	33	3	9.0909
ghariani-varprowl	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	94.0681	99.1348	89.4942	76.3243	1375	12	1380	162	1	0.6173
gduggal-snapvard	SNP	ti	map_l150_m2_e1	*	92.6900	96.1203	89.4961	82.4891	19919	804	19733	2316	191	8.2470
eyeh-varpipe	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	homalt	94.2215	99.4737	89.4961	39.1577	1323	7	1474	173	173	100.0000
jlack-gatk	INDEL	*	map_l100_m1_e0	het	93.6574	98.2103	89.5079	89.1540	2195	40	2201	258	20	7.7519
gduggal-snapplat	INDEL	*	map_l100_m2_e0	*	80.0736	72.4343	89.5141	91.6820	2675	1018	2911	341	39	11.4370
gduggal-snapvard	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	21.6505	12.3145	89.5161	61.9632	448	3190	333	39	39	100.0000
eyeh-varpipe	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	18.9437	10.5927	89.5161	64.6724	84	709	111	13	9	69.2308
ciseli-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	88.6568	87.8116	89.5184	60.6466	317	44	316	37	30	81.0811
ckim-vqsr	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	93.5214	97.8947	89.5221	87.3282	651	14	487	57	50	87.7193
jmaeng-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	94.4724	100.0000	89.5238	67.9878	188	0	188	22	21	95.4545
raldana-dualsentieon	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	94.4724	100.0000	89.5238	67.0846	188	0	188	22	21	95.4545
ciseli-custom	SNP	ti	map_l100_m2_e1	*	86.3257	83.3424	89.5306	71.0284	41242	8243	41176	4815	1336	27.7466
eyeh-varpipe	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	92.3833	95.4225	89.5317	74.6685	813	39	650	76	31	40.7895
eyeh-varpipe	INDEL	D6_15	map_l150_m1_e0	*	88.5933	87.6712	89.5349	90.3695	64	9	77	9	9	100.0000
mlin-fermikit	SNP	ti	HG002compoundhet	homalt	93.7665	98.4176	89.5352	35.5677	7277	117	7281	851	725	85.1939
gduggal-bwavard	SNP	ti	map_l150_m1_e0	het	93.4529	97.7284	89.5358	84.8427	12089	281	11996	1402	82	5.8488
ckim-gatk	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	93.1591	97.0864	89.5372	74.7588	933	28	890	104	94	90.3846
mlin-fermikit	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	82.4534	76.4045	89.5425	70.1754	136	42	137	16	16	100.0000
jmaeng-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	93.9195	98.7443	89.5442	81.8359	865	11	668	78	76	97.4359
jlack-gatk	SNP	*	map_l250_m2_e1	*	93.5343	97.8966	89.5442	92.9358	7819	168	7819	913	69	7.5575
hfeng-pmm2	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	93.7500	98.3607	89.5522	91.1842	60	1	60	7	5	71.4286

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