PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
44501-44550 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 87.1803 | 85.0575 | 89.4118 | 82.8629 | 74 | 13 | 76 | 9 | 8 | 88.8889 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 81.2248 | 74.4026 | 89.4244 | 27.1457 | 7037 | 2421 | 7644 | 904 | 893 | 98.7832 | |
| ciseli-custom | SNP | tv | map_l125_m2_e1 | homalt | 87.1141 | 84.9193 | 89.4252 | 70.0769 | 5158 | 916 | 5150 | 609 | 473 | 77.6683 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 81.5800 | 75.0000 | 89.4256 | 42.8500 | 2067 | 689 | 2055 | 243 | 230 | 94.6502 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 93.4647 | 97.8852 | 89.4261 | 56.5157 | 1620 | 35 | 1683 | 199 | 186 | 93.4673 | |
| gduggal-bwavard | INDEL | I1_5 | segdup | het | 92.9009 | 96.6543 | 89.4281 | 96.3152 | 520 | 18 | 516 | 61 | 52 | 85.2459 | |
| qzeng-custom | INDEL | I6_15 | * | * | 88.1501 | 86.9073 | 89.4289 | 48.1019 | 21573 | 3250 | 21640 | 2558 | 1057 | 41.3213 | |
| cchapple-custom | INDEL | D1_5 | map_l250_m1_e0 | het | 93.1984 | 97.2973 | 89.4309 | 94.7682 | 108 | 3 | 110 | 13 | 1 | 7.6923 | |
| jlack-gatk | INDEL | I1_5 | map_l250_m2_e1 | * | 92.8270 | 96.4912 | 89.4309 | 97.3985 | 110 | 4 | 110 | 13 | 2 | 15.3846 | |
| gduggal-snapvard | SNP | ti | map_l150_m2_e0 | * | 92.6480 | 96.1047 | 89.4313 | 82.4164 | 19713 | 799 | 19530 | 2308 | 189 | 8.1889 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 87.8199 | 86.2627 | 89.4344 | 51.7765 | 4584 | 730 | 11495 | 1358 | 772 | 56.8483 | |
| jpowers-varprowl | INDEL | I6_15 | HG002complexvar | homalt | 84.7204 | 80.4778 | 89.4353 | 51.1131 | 977 | 237 | 982 | 116 | 103 | 88.7931 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 89.3491 | 89.2617 | 89.4366 | 73.6549 | 133 | 16 | 127 | 15 | 9 | 60.0000 | |
| gduggal-snapvard | SNP | * | map_l100_m0_e0 | * | 92.6283 | 96.0476 | 89.4441 | 77.2407 | 31543 | 1298 | 31148 | 3676 | 276 | 7.5082 | |
| anovak-vg | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 91.5350 | 93.7209 | 89.4487 | 79.3835 | 6239 | 418 | 6587 | 777 | 381 | 49.0347 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 75.3208 | 65.0467 | 89.4493 | 64.1933 | 2088 | 1122 | 2128 | 251 | 224 | 89.2430 | |
| gduggal-bwafb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 84.1057 | 79.3599 | 89.4551 | 69.7220 | 1711 | 445 | 1773 | 209 | 166 | 79.4258 | |
| asubramanian-gatk | INDEL | * | map_l250_m2_e0 | * | 86.7966 | 84.2900 | 89.4569 | 99.1194 | 279 | 52 | 280 | 33 | 3 | 9.0909 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 90.9226 | 92.4365 | 89.4575 | 60.7169 | 1491 | 122 | 1451 | 171 | 123 | 71.9298 | |
| eyeh-varpipe | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 93.9250 | 98.8608 | 89.4585 | 75.5441 | 3211 | 37 | 3106 | 366 | 29 | 7.9235 | |
| eyeh-varpipe | SNP | tv | map_l100_m0_e0 | het | 94.2875 | 99.6677 | 89.4585 | 75.0937 | 7198 | 24 | 7137 | 841 | 11 | 1.3080 | |
| gduggal-snapplat | INDEL | * | map_l100_m2_e1 | * | 79.8823 | 72.1512 | 89.4689 | 91.7596 | 2710 | 1046 | 2948 | 347 | 39 | 11.2392 | |
| gduggal-snapfb | INDEL | I6_15 | map_l150_m1_e0 | * | 77.2727 | 68.0000 | 89.4737 | 89.3258 | 17 | 8 | 17 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l150_m2_e0 | * | 77.2727 | 68.0000 | 89.4737 | 90.9091 | 17 | 8 | 17 | 2 | 2 | 100.0000 | |
| gduggal-snapplat | INDEL | * | map_l100_m1_e0 | * | 79.9637 | 72.2811 | 89.4737 | 91.2096 | 2592 | 994 | 2822 | 332 | 38 | 11.4458 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 94.4444 | 100.0000 | 89.4737 | 99.3012 | 17 | 0 | 17 | 2 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | * | map_l125_m2_e0 | * | 91.8919 | 94.4444 | 89.4737 | 94.0645 | 2074 | 122 | 2074 | 244 | 79 | 32.3770 | |
| gduggal-snapplat | SNP | * | map_siren | hetalt | 87.2768 | 85.1852 | 89.4737 | 79.9472 | 69 | 12 | 68 | 8 | 8 | 100.0000 | |
| gduggal-snapplat | SNP | tv | map_siren | hetalt | 87.2768 | 85.1852 | 89.4737 | 79.9472 | 69 | 12 | 68 | 8 | 8 | 100.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_l150_m2_e0 | * | 94.4444 | 100.0000 | 89.4737 | 97.3865 | 17 | 0 | 17 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_l150_m2_e1 | * | 91.8919 | 94.4444 | 89.4737 | 97.4255 | 17 | 1 | 17 | 2 | 0 | 0.0000 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 88.1971 | 86.9565 | 89.4737 | 77.1084 | 20 | 3 | 17 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 84.4720 | 80.0000 | 89.4737 | 99.9564 | 16 | 4 | 17 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | segdup | het | 93.2216 | 97.2973 | 89.4737 | 95.2736 | 36 | 1 | 34 | 4 | 2 | 50.0000 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 89.4737 | 96.3844 | 0 | 0 | 34 | 4 | 3 | 75.0000 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 89.4737 | 96.3844 | 0 | 0 | 34 | 4 | 3 | 75.0000 | |
| jpowers-varprowl | INDEL | D6_15 | HG002complexvar | homalt | 84.3192 | 79.7263 | 89.4737 | 58.7771 | 932 | 237 | 935 | 110 | 93 | 84.5455 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l150_m2_e0 | * | 94.4444 | 100.0000 | 89.4737 | 97.6773 | 17 | 0 | 17 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l150_m2_e1 | * | 91.8919 | 94.4444 | 89.4737 | 97.7246 | 17 | 1 | 17 | 2 | 0 | 0.0000 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 88.4758 | 87.5000 | 89.4737 | 95.6916 | 14 | 2 | 17 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 89.4737 | 96.2891 | 0 | 0 | 34 | 4 | 3 | 75.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 89.4737 | 96.2891 | 0 | 0 | 34 | 4 | 3 | 75.0000 | |
| hfeng-pmm2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 94.4444 | 100.0000 | 89.4737 | 99.2945 | 17 | 0 | 17 | 2 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l125_m1_e0 | homalt | 84.4720 | 80.0000 | 89.4737 | 80.7107 | 12 | 3 | 34 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 94.4444 | 100.0000 | 89.4737 | 92.8972 | 2 | 0 | 34 | 4 | 3 | 75.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l100_m0_e0 | * | 72.3404 | 60.7143 | 89.4737 | 90.1042 | 17 | 11 | 17 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l100_m2_e1 | * | 66.2338 | 52.5773 | 89.4737 | 85.6784 | 51 | 46 | 51 | 6 | 6 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 54.0397 | 38.7097 | 89.4737 | 72.4638 | 108 | 171 | 34 | 4 | 4 | 100.0000 | |
| gduggal-bwavard | INDEL | I1_5 | tech_badpromoters | * | 82.9268 | 77.2727 | 89.4737 | 53.6585 | 17 | 5 | 17 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 43.5897 | 28.8136 | 89.4737 | 70.7692 | 17 | 42 | 17 | 2 | 2 | 100.0000 | |