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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 886 887 888 889 890 891 892 893 894 ... 1720 1721 » 44451-44500 / 86044 show all
eyeh-varpipe	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	het	82.2556	76.2295	89.3162	29.0192	93	29	627	75	75	100.0000
gduggal-snapplat	INDEL	D1_5	map_siren	het	85.7607	82.4769	89.3168	89.6940	1878	399	2157	258	42	16.2791
gduggal-snapfb	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	hetalt	81.1499	74.3504	89.3182	33.8346	3548	1224	393	47	47	100.0000
egarrison-hhga	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	90.2515	91.2014	89.3212	56.4841	1078	104	1079	129	86	66.6667
gduggal-bwafb	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	93.7638	98.6660	89.3256	80.9138	1997	27	2000	239	13	5.4393
ciseli-custom	SNP	tv	map_l125_m1_e0	homalt	87.0129	84.8123	89.3307	67.3979	4970	890	4965	593	461	77.7403
mlin-fermikit	INDEL	D6_15	*	homalt	93.1078	97.2178	89.3312	62.5603	6150	176	6171	737	721	97.8290
ndellapenna-hhga	INDEL	D6_15	map_l100_m1_e0	het	93.2926	97.6190	89.3333	87.2557	123	3	134	16	8	50.0000
gduggal-bwafb	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	92.3848	95.6522	89.3333	91.3793	66	3	67	8	4	50.0000
mlin-fermikit	INDEL	I1_5	map_l150_m2_e0	*	61.4412	46.8208	89.3382	85.2734	243	276	243	29	25	86.2069
eyeh-varpipe	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	93.7133	98.5372	89.3396	84.5796	10643	158	9822	1172	111	9.4710
mlin-fermikit	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	homalt	94.2645	99.7630	89.3404	69.5631	1684	4	1693	202	155	76.7327
qzeng-custom	SNP	*	map_l250_m1_e0	het	75.1142	64.7950	89.3431	96.3888	3081	1674	3060	365	301	82.4658
jlack-gatk	INDEL	I1_5	map_l250_m2_e0	*	92.7660	96.4602	89.3443	97.3426	109	4	109	13	2	15.3846
qzeng-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	93.5488	98.1667	89.3458	72.6223	2945	55	3346	399	43	10.7769
jmaeng-gatk	INDEL	D1_5	map_l150_m1_e0	het	93.8151	98.7552	89.3458	92.9596	476	6	478	57	4	7.0175
ghariani-varprowl	INDEL	*	HG002complexvar	het	93.2466	97.4941	89.3538	59.7893	45053	1158	45020	5364	4472	83.3706
qzeng-custom	INDEL	I6_15	HG002complexvar	homalt	93.7520	98.5997	89.3586	51.1570	1197	17	1226	146	83	56.8493
ghariani-varprowl	SNP	ti	map_l250_m0_e0	het	93.0734	97.1092	89.3596	95.1651	907	27	907	108	15	13.8889
ghariani-varprowl	INDEL	*	map_l125_m2_e1	*	91.8033	94.3820	89.3617	94.1271	2100	125	2100	250	82	32.8000
astatham-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_homopolymer_gt10	het	92.3077	95.4545	89.3617	96.6284	42	2	42	5	0	0.0000
anovak-vg	INDEL	D6_15	segdup	homalt	85.5227	82.0000	89.3617	91.4234	41	9	42	5	3	60.0000
rpoplin-dv42	INDEL	D16_PLUS	map_l100_m2_e1	het	85.7143	82.3529	89.3617	90.8382	42	9	42	5	2	40.0000
gduggal-bwavard	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	92.4479	95.7527	89.3636	86.9652	4058	180	4016	478	89	18.6192
ghariani-varprowl	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	93.7601	98.6107	89.3644	68.0129	17603	248	17687	2105	19	0.9026
jlack-gatk	INDEL	I1_5	map_l150_m2_e1	het	93.2461	97.4763	89.3678	93.8559	309	8	311	37	2	5.4054
qzeng-custom	INDEL	*	map_l250_m2_e0	*	75.8372	65.8610	89.3750	97.9118	218	113	286	34	17	50.0000
mlin-fermikit	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	het	92.3787	95.5903	89.3758	38.2787	672	31	673	80	79	98.7500
gduggal-bwafb	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	87.7698	86.2191	89.3773	67.9201	244	39	244	29	29	100.0000
jlack-gatk	INDEL	I1_5	map_l150_m2_e0	het	93.2231	97.4110	89.3805	93.8420	301	8	303	36	2	5.5556
ndellapenna-hhga	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	88.6086	87.8487	89.3817	86.9060	57410	7941	58141	6907	5920	85.7101
ndellapenna-hhga	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	88.6086	87.8487	89.3817	86.9060	57410	7941	58141	6907	5920	85.7101
eyeh-varpipe	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	73.1236	61.8658	89.3899	45.9110	378	233	337	40	35	87.5000
gduggal-snapfb	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	73.3639	62.2101	89.3910	71.1778	456	277	455	54	30	55.5556
ciseli-custom	SNP	ti	map_l100_m1_e0	*	86.1026	83.0465	89.3922	69.2811	39805	8126	39742	4716	1317	27.9262
mlin-fermikit	INDEL	I1_5	map_l150_m1_e0	*	61.2987	46.6403	89.3939	82.1138	236	270	236	28	25	89.2857
rpoplin-dv42	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	92.9134	96.7213	89.3939	84.5794	59	2	59	7	6	85.7143
jpowers-varprowl	INDEL	I1_5	map_l250_m2_e0	het	89.3939	89.3939	89.3939	97.2454	59	7	59	7	3	42.8571
jpowers-varprowl	INDEL	I1_5	map_l250_m2_e1	het	89.3939	89.3939	89.3939	97.3419	59	7	59	7	3	42.8571
ciseli-custom	SNP	tv	map_l125_m2_e0	homalt	87.1292	84.9759	89.3945	70.0273	5113	904	5108	606	472	77.8878
egarrison-hhga	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	88.6605	87.9344	89.3987	86.9048	57466	7885	57984	6876	6009	87.3909
egarrison-hhga	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	88.6605	87.9344	89.3987	86.9048	57466	7885	57984	6876	6009	87.3909
anovak-vg	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	86.5003	83.7811	89.4019	58.5292	842	163	852	101	62	61.3861
jlack-gatk	INDEL	*	map_l150_m1_e0	*	93.5297	98.0568	89.4022	92.0707	1312	26	1316	156	9	5.7692
bgallagher-sentieon	INDEL	D16_PLUS	map_siren	*	92.1664	95.1049	89.4040	94.5171	136	7	135	16	2	12.5000
dgrover-gatk	INDEL	D16_PLUS	map_siren	*	92.1664	95.1049	89.4040	94.7129	136	7	135	16	2	12.5000
dgrover-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	94.4072	100.0000	89.4068	69.4696	211	0	211	25	24	96.0000
astatham-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	94.4072	100.0000	89.4068	69.3904	211	0	211	25	24	96.0000
egarrison-hhga	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	90.8228	92.2830	89.4081	69.5735	287	24	287	34	29	85.2941
hfeng-pmm3	INDEL	*	map_l250_m0_e0	*	93.2515	97.4359	89.4118	97.2159	76	2	76	9	2	22.2222

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