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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 884 885 886 887 888 889 890 891 892 ... 1720 1721 » 44351-44400 / 86044 show all
jlack-gatk	SNP	ti	map_l125_m0_e0	het	93.6780	98.7414	89.1086	85.4382	8159	104	8157	997	87	8.7262
gduggal-bwafb	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	82.5353	76.8626	89.1121	55.4494	3126	941	3282	401	398	99.2519
jpowers-varprowl	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	50.1828	34.9234	89.1245	58.3302	1984	3697	1975	241	212	87.9668
jlack-gatk	SNP	*	map_l250_m1_e0	*	93.2444	97.7569	89.1302	92.5027	7060	162	7060	861	66	7.6655
hfeng-pmm3	INDEL	I16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	homalt	94.2529	100.0000	89.1304	87.2928	41	0	41	5	5	100.0000
hfeng-pmm2	INDEL	I16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	homalt	94.2529	100.0000	89.1304	87.6011	41	0	41	5	5	100.0000
hfeng-pmm1	INDEL	I16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	homalt	94.2529	100.0000	89.1304	87.5000	41	0	41	5	5	100.0000
eyeh-varpipe	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	17.4592	9.6774	89.1304	79.6460	21	196	41	5	4	80.0000
eyeh-varpipe	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	79.6906	72.0588	89.1304	56.8075	49	19	82	10	10	100.0000
gduggal-snapfb	INDEL	I6_15	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	86.3158	83.6735	89.1304	77.9904	41	8	41	5	5	100.0000
ckim-isaac	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_11to50	het	78.7229	70.4918	89.1304	63.2000	43	18	41	5	2	40.0000
dgrover-gatk	INDEL	*	lowcmp_SimpleRepeat_triTR_51to200	het	90.5425	92.0000	89.1304	86.4706	46	4	41	5	2	40.0000
ckim-vqsr	INDEL	*	lowcmp_SimpleRepeat_triTR_51to200	het	90.5425	92.0000	89.1304	86.2687	46	4	41	5	2	40.0000
anovak-vg	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	91.2721	93.5191	89.1304	80.4771	10101	700	10578	1290	640	49.6124
astatham-gatk	INDEL	*	lowcmp_SimpleRepeat_triTR_51to200	het	90.5425	92.0000	89.1304	86.3905	46	4	41	5	2	40.0000
ckim-gatk	INDEL	*	lowcmp_SimpleRepeat_triTR_51to200	het	90.5425	92.0000	89.1304	86.2687	46	4	41	5	2	40.0000
gduggal-snapfb	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	hetalt	80.6675	73.6706	89.1329	45.4946	7717	2758	2313	282	188	66.6667
mlin-fermikit	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	85.8694	82.8315	89.1386	45.6102	18430	3820	18400	2242	2180	97.2346
ghariani-varprowl	INDEL	*	map_siren	*	90.8910	92.7126	89.1397	90.4253	6870	540	6870	837	449	53.6440
qzeng-custom	INDEL	I6_15	segdup	*	89.9918	90.8571	89.1429	92.6931	159	16	156	19	4	21.0526
gduggal-snapvard	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	93.0446	97.3019	89.1441	72.7080	17094	474	16957	2065	141	6.8281
ciseli-custom	SNP	ti	HG002complexvar	hetalt	68.4524	55.5556	89.1473	41.3636	115	92	115	14	9	64.2857
gduggal-snapvard	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	92.8856	96.9499	89.1483	74.7503	4164	131	4124	502	11	2.1912
ckim-isaac	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	84.2675	79.8913	89.1509	81.5972	882	222	945	115	66	57.3913
ghariani-varprowl	INDEL	I6_15	HG002complexvar	homalt	84.4108	80.1483	89.1522	51.9071	973	241	978	119	99	83.1933
ciseli-custom	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	*	93.3626	97.9878	89.1544	38.6200	7207	148	7201	876	61	6.9635
egarrison-hhga	INDEL	I16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	84.3305	80.0000	89.1566	86.2583	76	19	74	9	4	44.4444
bgallagher-sentieon	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	92.8572	96.8783	89.1566	74.3497	931	30	888	108	98	90.7407
jpowers-varprowl	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	86.8788	84.7120	89.1593	77.2464	809	146	806	98	98	100.0000
gduggal-snapfb	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	68.0898	55.0736	89.1626	33.2237	711	580	362	44	24	54.5455
gduggal-bwavard	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	92.1673	95.3799	89.1641	87.4464	6565	318	6443	783	169	21.5837
qzeng-custom	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	het	89.2573	89.3506	89.1641	59.4561	344	41	864	105	76	72.3810
ghariani-varprowl	INDEL	I1_5	map_l100_m0_e0	het	93.5860	98.4663	89.1667	91.2643	321	5	321	39	10	25.6410
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	67.3943	54.1667	89.1697	75.4215	494	418	494	60	57	95.0000
mlin-fermikit	SNP	tv	map_l100_m2_e1	*	71.2430	59.3165	89.1725	57.7345	14997	10286	14989	1820	1600	87.9121
gduggal-bwavard	INDEL	D1_5	map_siren	het	93.7475	98.8142	89.1751	86.6713	2250	27	2216	269	92	34.2007
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_51to200	*	81.2423	74.6055	89.1753	53.3280	520	177	519	63	62	98.4127
jmaeng-gatk	INDEL	D16_PLUS	map_siren	homalt	92.9577	97.0588	89.1892	94.0419	33	1	33	4	0	0.0000
gduggal-bwafb	SNP	tv	tech_badpromoters	het	94.2857	100.0000	89.1892	66.6667	33	0	33	4	0	0.0000
gduggal-bwaplat	INDEL	I16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	66.7081	53.2787	89.1892	86.8093	65	57	66	8	8	100.0000
jlack-gatk	SNP	tv	tech_badpromoters	het	94.2857	100.0000	89.1892	52.5641	33	0	33	4	0	0.0000
hfeng-pmm3	INDEL	*	lowcmp_SimpleRepeat_diTR_51to200	homalt	90.5350	91.9220	89.1892	48.1793	330	29	330	40	38	95.0000
ghariani-varprowl	INDEL	I1_5	map_l250_m1_e0	*	91.2442	93.3962	89.1892	97.0217	99	7	99	12	4	33.3333
gduggal-snapplat	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	58.9713	44.0476	89.1892	83.3333	37	47	33	4	2	50.0000
eyeh-varpipe	INDEL	*	decoy	*	64.0777	50.0000	89.1892	99.8767	5	5	33	4	3	75.0000
qzeng-custom	INDEL	*	map_l250_m2_e1	*	75.9087	66.0661	89.1975	97.9280	220	113	289	35	17	48.5714
gduggal-bwafb	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	89.7973	90.4000	89.2026	69.9879	2712	288	2875	348	312	89.6552
mlin-fermikit	INDEL	I16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	80.9804	74.1455	89.2034	78.7338	846	295	851	103	101	98.0583
gduggal-snapfb	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt	92.8220	96.7435	89.2061	36.1513	7011	236	7000	847	807	95.2774
ckim-dragen	INDEL	D16_PLUS	HG002compoundhet	het	93.6315	98.5185	89.2063	59.4595	399	6	281	34	31	91.1765

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