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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 883 884 885 886 887 888 889 890 891 ... 1720 1721 » 44301-44350 / 86044 show all
jlack-gatk	SNP	*	map_l150_m2_e1	het	93.7014	98.9098	89.0141	86.6201	20141	222	20135	2485	178	7.1630
gduggal-bwavard	INDEL	I1_5	map_l150_m2_e1	het	93.4841	98.4227	89.0173	93.4950	312	5	308	38	14	36.8421
gduggal-bwavard	INDEL	I1_5	map_l150_m2_e0	het	93.4675	98.3819	89.0208	93.4867	304	5	300	37	13	35.1351
cchapple-custom	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	93.5988	98.6711	89.0226	42.7218	594	8	592	73	71	97.2603
gduggal-snapplat	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	56.3704	41.2427	89.0242	57.5472	4580	6525	4607	568	500	88.0282
ghariani-varprowl	INDEL	I1_5	map_l150_m1_e0	het	93.1419	97.6589	89.0244	93.6692	292	7	292	36	9	25.0000
eyeh-varpipe	INDEL	I6_15	map_siren	het	82.9333	77.6224	89.0244	72.7121	111	32	146	18	16	88.8889
dgrover-gatk	INDEL	*	HG002compoundhet	het	93.5069	98.4612	89.0273	79.7555	4031	63	3789	467	459	98.2869
ckim-vqsr	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	94.1964	100.0000	89.0295	69.3402	211	0	211	26	25	96.1538
ckim-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	94.1964	100.0000	89.0295	69.3402	211	0	211	26	25	96.1538
gduggal-snapplat	SNP	tv	map_l250_m0_e0	het	79.8457	72.3776	89.0323	97.1314	414	158	414	51	14	27.4510
jlack-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	93.7644	99.0244	89.0351	90.6863	203	2	203	25	23	92.0000
jlack-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	93.7644	99.0244	89.0351	90.6863	203	2	203	25	23	92.0000
gduggal-snapplat	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	82.6699	77.1496	89.0409	77.8450	16895	5004	19914	2451	1673	68.2579
qzeng-custom	INDEL	*	map_l250_m1_e0	*	75.5265	65.5738	89.0411	97.9332	200	105	260	32	16	50.0000
gduggal-snapplat	INDEL	D1_5	map_l100_m1_e0	het	85.1353	81.5550	89.0443	91.4683	986	223	1146	141	27	19.1489
egarrison-hhga	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	90.5056	92.0139	89.0459	72.4440	265	23	252	31	15	48.3871
dgrover-gatk	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	93.2637	97.8947	89.0511	87.2350	651	14	488	60	49	81.6667
ndellapenna-hhga	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	92.0308	95.2128	89.0547	65.6410	179	9	179	22	18	81.8182
anovak-vg	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	86.9581	84.9537	89.0595	73.1224	18604	3295	18674	2294	1762	76.8091
raldana-dualsentieon	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	93.7500	98.9446	89.0736	60.1703	375	4	375	46	46	100.0000
mlin-fermikit	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	82.0706	76.0870	89.0756	91.1787	210	66	212	26	7	26.9231
gduggal-bwafb	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	92.1548	95.4545	89.0756	91.5182	105	5	106	13	8	61.5385
gduggal-snapfb	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	87.7988	86.5556	89.0781	44.8149	17827	2769	18620	2283	1417	62.0675
ciseli-custom	SNP	tv	map_siren	*	87.3579	85.7022	89.0790	62.2878	39363	6567	39315	4820	974	20.2075
jmaeng-gatk	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	92.4799	96.1498	89.0799	74.5628	924	37	881	108	102	94.4444
mlin-fermikit	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	79.6367	72.0025	89.0817	63.6267	4552	1770	4569	560	555	99.1071
mlin-fermikit	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	79.6367	72.0025	89.0817	63.6267	4552	1770	4569	560	555	99.1071
jlack-gatk	INDEL	D1_5	map_l100_m0_e0	*	93.4498	98.2619	89.0871	88.3254	848	15	849	104	6	5.7692
egarrison-hhga	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_51to200	*	79.2866	71.4286	89.0873	67.9389	440	176	449	55	49	89.0909
egarrison-hhga	INDEL	*	map_l250_m0_e0	het	90.7407	92.4528	89.0909	97.6774	49	4	49	6	1	16.6667
ckim-isaac	INDEL	D16_PLUS	segdup	*	86.7257	84.4828	89.0909	92.1090	49	9	49	6	3	50.0000
ckim-isaac	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	86.6039	84.2520	89.0909	56.0000	107	20	98	12	8	66.6667
qzeng-custom	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_51to200	het	82.5611	76.9231	89.0909	67.2619	10	3	49	6	4	66.6667
ndellapenna-hhga	INDEL	D16_PLUS	lowcmp_SimpleRepeat_homopolymer_gt10	*	79.6748	72.0588	89.0909	96.9846	49	19	49	6	6	100.0000
gduggal-bwaplat	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	54.7486	39.5161	89.0909	97.3583	49	75	49	6	1	16.6667
eyeh-varpipe	INDEL	I6_15	map_l150_m1_e0	*	77.1296	68.0000	89.0909	85.2151	17	8	49	6	5	83.3333
jpowers-varprowl	INDEL	*	map_l250_m0_e0	het	90.7407	92.4528	89.0909	98.3513	49	4	49	6	3	50.0000
gduggal-snapfb	INDEL	I1_5	map_l150_m0_e0	het	90.7407	92.4528	89.0909	90.5902	98	8	98	12	2	16.6667
gduggal-snapvard	SNP	ti	map_l150_m1_e0	*	92.4318	96.0278	89.0953	81.2252	18929	783	18751	2295	187	8.1482
gduggal-snapplat	INDEL	D1_5	*	*	84.8354	80.9636	89.0961	66.8161	118810	27935	139871	17118	4621	26.9950
gduggal-snapplat	INDEL	D1_5	map_l100_m2_e0	het	85.3180	81.8471	89.0963	91.8164	1028	228	1193	146	28	19.1781
ndellapenna-hhga	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	88.3102	87.5375	89.0966	84.7216	583	83	572	70	42	60.0000
ndellapenna-hhga	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	88.3102	87.5375	89.0966	84.7216	583	83	572	70	42	60.0000
mlin-fermikit	SNP	tv	map_l100_m2_e0	*	71.0756	59.1180	89.0970	57.6083	14799	10234	14791	1810	1594	88.0663
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	59.8657	45.0761	89.0995	75.7842	563	686	564	69	66	95.6522
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	59.8657	45.0761	89.0995	75.7842	563	686	564	69	66	95.6522
bgallagher-sentieon	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	94.2356	100.0000	89.0995	67.4383	188	0	188	23	22	95.6522
jpowers-varprowl	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	64.6659	50.7487	89.1009	66.3976	9219	8947	9197	1125	989	87.9111
jpowers-varprowl	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	64.6659	50.7487	89.1009	66.3976	9219	8947	9197	1125	989	87.9111

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