PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
43451-43500 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | INDEL | I16_PLUS | map_l125_m1_e0 | * | 90.3226 | 93.3333 | 87.5000 | 96.4365 | 14 | 1 | 14 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | map_l125_m0_e0 | het | 82.3529 | 77.7778 | 87.5000 | 95.6522 | 7 | 2 | 7 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | map_l125_m1_e0 | homalt | 84.8485 | 82.3529 | 87.5000 | 86.6109 | 28 | 6 | 28 | 4 | 4 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | map_l150_m0_e0 | homalt | 93.3333 | 100.0000 | 87.5000 | 93.0435 | 7 | 0 | 7 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 91.1519 | 95.1220 | 87.5000 | 86.9767 | 39 | 2 | 49 | 7 | 6 | 85.7143 | |
| jlack-gatk | INDEL | I6_15 | map_l100_m2_e0 | het | 89.6000 | 91.8033 | 87.5000 | 91.2688 | 56 | 5 | 56 | 8 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l100_m2_e1 | het | 89.6000 | 91.8033 | 87.5000 | 91.4894 | 56 | 5 | 56 | 8 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l150_m0_e0 | * | 87.5000 | 87.5000 | 87.5000 | 97.4277 | 7 | 1 | 7 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l150_m1_e0 | homalt | 93.3333 | 100.0000 | 87.5000 | 94.6309 | 7 | 0 | 7 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l150_m2_e0 | homalt | 93.3333 | 100.0000 | 87.5000 | 95.3757 | 7 | 0 | 7 | 1 | 0 | 0.0000 | |
| jlack-gatk | SNP | * | segdup | hetalt | 93.3333 | 100.0000 | 87.5000 | 98.2533 | 7 | 0 | 7 | 1 | 1 | 100.0000 | |
| jlack-gatk | SNP | ti | map_l150_m1_e0 | hetalt | 90.3226 | 93.3333 | 87.5000 | 86.0870 | 14 | 1 | 14 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | ti | map_l150_m2_e0 | hetalt | 90.3226 | 93.3333 | 87.5000 | 87.8788 | 14 | 1 | 14 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | ti | map_l150_m2_e1 | hetalt | 90.3226 | 93.3333 | 87.5000 | 87.8788 | 14 | 1 | 14 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | tv | segdup | hetalt | 93.3333 | 100.0000 | 87.5000 | 98.2533 | 7 | 0 | 7 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l100_m1_e0 | het | 90.3904 | 93.4783 | 87.5000 | 94.1889 | 43 | 3 | 42 | 6 | 2 | 33.3333 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 90.3226 | 93.3333 | 87.5000 | 94.3060 | 14 | 1 | 14 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l125_m1_e0 | * | 90.3226 | 93.3333 | 87.5000 | 95.2522 | 14 | 1 | 14 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l150_m1_e0 | het | 93.3333 | 100.0000 | 87.5000 | 96.9697 | 14 | 0 | 14 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l150_m1_e0 | hetalt | 87.5000 | 87.5000 | 87.5000 | 90.6977 | 7 | 1 | 7 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 87.5000 | 87.5000 | 87.5000 | 91.4894 | 7 | 1 | 7 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 82.3529 | 77.7778 | 87.5000 | 91.7526 | 7 | 2 | 7 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l250_m2_e0 | * | 91.3043 | 95.4545 | 87.5000 | 97.1188 | 21 | 1 | 21 | 3 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l250_m2_e1 | * | 91.3043 | 95.4545 | 87.5000 | 97.2125 | 21 | 1 | 21 | 3 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | map_l125_m1_e0 | * | 90.3226 | 93.3333 | 87.5000 | 95.8115 | 14 | 1 | 14 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | map_l125_m2_e0 | * | 90.3226 | 93.3333 | 87.5000 | 96.3303 | 14 | 1 | 14 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | map_l125_m2_e1 | * | 90.3226 | 93.3333 | 87.5000 | 96.3470 | 14 | 1 | 14 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | func_cds | het | 87.5000 | 87.5000 | 87.5000 | 78.9474 | 7 | 1 | 7 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 89.1599 | 90.8840 | 87.5000 | 82.4945 | 329 | 33 | 210 | 30 | 30 | 100.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_l150_m1_e0 | het | 93.3333 | 100.0000 | 87.5000 | 95.4674 | 14 | 0 | 14 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | map_l125_m2_e0 | * | 90.3226 | 93.3333 | 87.5000 | 96.5066 | 14 | 1 | 14 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | map_l125_m2_e1 | * | 90.3226 | 93.3333 | 87.5000 | 96.5217 | 14 | 1 | 14 | 2 | 0 | 0.0000 | |
| egarrison-hhga | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 82.3529 | 77.7778 | 87.5000 | 91.4894 | 7 | 2 | 7 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 87.5000 | 96.2175 | 0 | 0 | 28 | 4 | 1 | 25.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_l125_m1_e0 | het | 0.0000 | 0.0000 | 87.5000 | 95.8261 | 0 | 0 | 21 | 3 | 1 | 33.3333 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l150_m0_e0 | * | 93.3333 | 100.0000 | 87.5000 | 93.6508 | 7 | 0 | 7 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l150_m0_e0 | het | 93.3333 | 100.0000 | 87.5000 | 91.0112 | 7 | 0 | 7 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l150_m0_e0 | homalt | 93.3333 | 100.0000 | 87.5000 | 93.7500 | 7 | 0 | 7 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 86.2319 | 85.0000 | 87.5000 | 86.9801 | 136 | 24 | 126 | 18 | 8 | 44.4444 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l100_m0_e0 | het | 87.5000 | 87.5000 | 87.5000 | 85.1852 | 7 | 1 | 7 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | map_l125_m2_e0 | * | 90.3226 | 93.3333 | 87.5000 | 97.2556 | 14 | 1 | 14 | 2 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | map_l125_m2_e1 | * | 90.3226 | 93.3333 | 87.5000 | 97.2603 | 14 | 1 | 14 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l125_m1_e0 | * | 90.3226 | 93.3333 | 87.5000 | 96.5066 | 14 | 1 | 14 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_l125_m0_e0 | het | 82.3529 | 77.7778 | 87.5000 | 95.8974 | 7 | 2 | 7 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l125_m0_e0 | het | 37.8378 | 24.1379 | 87.5000 | 96.7347 | 7 | 22 | 7 | 1 | 1 | 100.0000 | |
| ckim-isaac | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 54.9020 | 40.0000 | 87.5000 | 88.3212 | 14 | 21 | 14 | 2 | 2 | 100.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 90.3226 | 93.3333 | 87.5000 | 96.2264 | 14 | 1 | 14 | 2 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l150_m0_e0 | * | 93.3333 | 100.0000 | 87.5000 | 98.0723 | 7 | 0 | 7 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l150_m0_e0 | het | 93.3333 | 100.0000 | 87.5000 | 97.5758 | 7 | 0 | 7 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | segdup | * | 91.8033 | 96.5517 | 87.5000 | 96.9711 | 56 | 2 | 56 | 8 | 2 | 25.0000 | |