PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
43301-43350 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 92.0189 | 97.0540 | 87.4804 | 71.5621 | 593 | 18 | 559 | 80 | 76 | 95.0000 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 88.6540 | 89.8499 | 87.4895 | 45.7726 | 8498 | 960 | 9343 | 1336 | 702 | 52.5449 | |
| qzeng-custom | INDEL | D6_15 | map_l150_m0_e0 | * | 80.7692 | 75.0000 | 87.5000 | 96.5517 | 24 | 8 | 28 | 4 | 2 | 50.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l150_m0_e0 | * | 87.5000 | 87.5000 | 87.5000 | 95.7219 | 7 | 1 | 7 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l250_m2_e0 | * | 87.5000 | 87.5000 | 87.5000 | 96.8127 | 7 | 1 | 7 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l250_m2_e1 | * | 87.5000 | 87.5000 | 87.5000 | 96.9349 | 7 | 1 | 7 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 82.3529 | 77.7778 | 87.5000 | 88.8889 | 7 | 2 | 7 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l150_m0_e0 | * | 93.3333 | 100.0000 | 87.5000 | 94.2029 | 7 | 0 | 7 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l150_m0_e0 | het | 93.3333 | 100.0000 | 87.5000 | 91.9192 | 7 | 0 | 7 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 71.1864 | 60.0000 | 87.5000 | 90.3614 | 12 | 8 | 7 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l150_m0_e0 | homalt | 93.3333 | 100.0000 | 87.5000 | 94.2446 | 7 | 0 | 7 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l100_m0_e0 | het | 87.5000 | 87.5000 | 87.5000 | 86.2069 | 7 | 1 | 7 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 84.8485 | 82.3529 | 87.5000 | 99.9550 | 14 | 3 | 14 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 87.5000 | 87.5000 | 87.5000 | 91.7526 | 14 | 2 | 14 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 87.5000 | 87.5000 | 87.5000 | 91.8367 | 14 | 2 | 14 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 91.3043 | 95.4545 | 87.5000 | 81.2500 | 21 | 1 | 21 | 3 | 3 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 90.3226 | 93.3333 | 87.5000 | 94.7368 | 14 | 1 | 14 | 2 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D1_5 | tech_badpromoters | het | 87.5000 | 87.5000 | 87.5000 | 33.3333 | 7 | 1 | 7 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 45.1613 | 30.4348 | 87.5000 | 27.2727 | 7 | 16 | 7 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_siren | homalt | 81.7259 | 76.6667 | 87.5000 | 82.1029 | 69 | 21 | 70 | 10 | 10 | 100.0000 | |
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 93.3333 | 100.0000 | 87.5000 | 95.2381 | 7 | 0 | 7 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 93.3333 | 100.0000 | 87.5000 | 99.2905 | 12 | 0 | 14 | 2 | 2 | 100.0000 | |
| ndellapenna-hhga | INDEL | * | map_l100_m0_e0 | hetalt | 81.2065 | 75.7576 | 87.5000 | 92.6380 | 25 | 8 | 21 | 3 | 0 | 0.0000 | |
| rpoplin-dv42 | SNP | ti | map_l100_m0_e0 | hetalt | 93.3333 | 100.0000 | 87.5000 | 82.4176 | 14 | 0 | 14 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | segdup | het | 93.3333 | 100.0000 | 87.5000 | 97.4260 | 37 | 0 | 35 | 5 | 2 | 40.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_l125_m2_e0 | * | 90.3226 | 93.3333 | 87.5000 | 97.2077 | 14 | 1 | 14 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_l125_m2_e1 | * | 90.3226 | 93.3333 | 87.5000 | 97.2125 | 14 | 1 | 14 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l150_m1_e0 | * | 85.7143 | 84.0000 | 87.5000 | 96.2675 | 21 | 4 | 21 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | I6_15 | map_l150_m2_e0 | * | 85.7143 | 84.0000 | 87.5000 | 96.7078 | 21 | 4 | 21 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l150_m1_e0 | het | 93.3333 | 100.0000 | 87.5000 | 97.0909 | 14 | 0 | 14 | 2 | 0 | 0.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l250_m0_e0 | het | 90.3226 | 93.3333 | 87.5000 | 98.4848 | 14 | 1 | 14 | 2 | 1 | 50.0000 | |
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 93.3333 | 100.0000 | 87.5000 | 97.4359 | 7 | 0 | 7 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | HG002compoundhet | * | 0.0000 | 0.0000 | 87.5000 | 88.7324 | 0 | 0 | 28 | 4 | 4 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 87.5000 | 95.7895 | 0 | 0 | 7 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 87.5000 | 93.7853 | 0 | 1 | 77 | 11 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 75.6757 | 66.6667 | 87.5000 | 94.5946 | 6 | 3 | 7 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 87.5000 | 87.5000 | 87.5000 | 78.3784 | 7 | 1 | 7 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l125_m0_e0 | het | 82.3529 | 77.7778 | 87.5000 | 88.8889 | 7 | 2 | 7 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 89.5349 | 91.6667 | 87.5000 | 71.7647 | 22 | 2 | 21 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 87.5000 | 95.6284 | 0 | 0 | 7 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 87.5000 | 96.6387 | 0 | 0 | 7 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 87.5000 | 97.3941 | 0 | 0 | 14 | 2 | 1 | 50.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | func_cds | het | 87.5000 | 87.5000 | 87.5000 | 72.4138 | 7 | 1 | 7 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l125_m1_e0 | * | 82.3529 | 77.7778 | 87.5000 | 98.2621 | 21 | 6 | 21 | 3 | 2 | 66.6667 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l125_m2_e0 | * | 82.3529 | 77.7778 | 87.5000 | 98.3075 | 21 | 6 | 21 | 3 | 2 | 66.6667 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l125_m2_e1 | * | 80.7692 | 75.0000 | 87.5000 | 98.3146 | 21 | 7 | 21 | 3 | 2 | 66.6667 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 73.6842 | 63.6364 | 87.5000 | 99.5068 | 7 | 4 | 7 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | func_cds | * | 70.0000 | 58.3333 | 87.5000 | 66.6667 | 7 | 5 | 7 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l150_m0_e0 | * | 93.3333 | 100.0000 | 87.5000 | 90.5882 | 7 | 0 | 7 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l150_m0_e0 | het | 93.3333 | 100.0000 | 87.5000 | 86.4407 | 7 | 0 | 7 | 1 | 0 | 0.0000 | |