PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
43051-43100 / 86044 show all | |||||||||||||||
| ciseli-custom | SNP | * | map_l100_m1_e0 | het | 81.6533 | 76.9704 | 86.9429 | 74.2795 | 34913 | 10446 | 34838 | 5232 | 159 | 3.0390 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 88.3380 | 89.7756 | 86.9458 | 76.1737 | 360 | 41 | 353 | 53 | 41 | 77.3585 | |
| eyeh-varpipe | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 92.4797 | 98.7648 | 86.9467 | 79.4810 | 1999 | 25 | 1925 | 289 | 9 | 3.1142 | |
| gduggal-bwavard | SNP | tv | map_l125_m0_e0 | * | 92.0149 | 97.7077 | 86.9489 | 82.9272 | 6479 | 152 | 6469 | 971 | 34 | 3.5015 | |
| ghariani-varprowl | SNP | ti | HG002compoundhet | homalt | 92.9457 | 99.8242 | 86.9540 | 37.0935 | 7381 | 13 | 7385 | 1108 | 880 | 79.4224 | |
| ciseli-custom | SNP | ti | map_l125_m0_e0 | homalt | 86.4046 | 85.8606 | 86.9555 | 67.4980 | 3856 | 635 | 3853 | 578 | 472 | 81.6609 | |
| ckim-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | * | 89.3855 | 91.9540 | 86.9565 | 95.3252 | 80 | 7 | 80 | 12 | 4 | 33.3333 | |
| ckim-gatk | INDEL | D6_15 | map_l150_m0_e0 | het | 93.0233 | 100.0000 | 86.9565 | 96.0276 | 20 | 0 | 20 | 3 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 91.9540 | 97.5610 | 86.9565 | 88.1748 | 40 | 1 | 40 | 6 | 6 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 90.9091 | 95.2381 | 86.9565 | 50.0000 | 20 | 1 | 20 | 3 | 2 | 66.6667 | |
| mlin-fermikit | INDEL | I6_15 | map_l125_m1_e0 | het | 73.2883 | 63.3333 | 86.9565 | 81.4516 | 19 | 11 | 20 | 3 | 2 | 66.6667 | |
| mlin-fermikit | INDEL | I6_15 | map_l125_m2_e0 | het | 73.2883 | 63.3333 | 86.9565 | 84.6667 | 19 | 11 | 20 | 3 | 2 | 66.6667 | |
| mlin-fermikit | INDEL | I6_15 | map_l125_m2_e1 | het | 73.2883 | 63.3333 | 86.9565 | 84.9673 | 19 | 11 | 20 | 3 | 2 | 66.6667 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 91.9540 | 97.5610 | 86.9565 | 86.2687 | 40 | 1 | 40 | 6 | 6 | 100.0000 | |
| rpoplin-dv42 | SNP | * | map_l150_m1_e0 | hetalt | 93.0233 | 100.0000 | 86.9565 | 87.1508 | 20 | 0 | 20 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | * | map_l150_m2_e0 | hetalt | 93.0233 | 100.0000 | 86.9565 | 88.7255 | 20 | 0 | 20 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | * | map_l150_m2_e1 | hetalt | 93.0233 | 100.0000 | 86.9565 | 88.8889 | 20 | 0 | 20 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_l150_m1_e0 | hetalt | 93.0233 | 100.0000 | 86.9565 | 87.1508 | 20 | 0 | 20 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_l150_m2_e0 | hetalt | 93.0233 | 100.0000 | 86.9565 | 88.7255 | 20 | 0 | 20 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_l150_m2_e1 | hetalt | 93.0233 | 100.0000 | 86.9565 | 88.8889 | 20 | 0 | 20 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 83.7927 | 80.8511 | 86.9565 | 77.0000 | 38 | 9 | 40 | 6 | 5 | 83.3333 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 91.9540 | 97.5610 | 86.9565 | 88.1748 | 40 | 1 | 40 | 6 | 6 | 100.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 86.3992 | 85.8491 | 86.9565 | 83.3031 | 91 | 15 | 80 | 12 | 5 | 41.6667 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l100_m1_e0 | * | 81.6327 | 76.9231 | 86.9565 | 87.7660 | 20 | 6 | 20 | 3 | 1 | 33.3333 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l100_m2_e0 | * | 81.6327 | 76.9231 | 86.9565 | 89.9123 | 20 | 6 | 20 | 3 | 1 | 33.3333 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l100_m2_e1 | * | 81.6327 | 76.9231 | 86.9565 | 90.0433 | 20 | 6 | 20 | 3 | 1 | 33.3333 | |
| eyeh-varpipe | INDEL | * | decoy | het | 63.4921 | 50.0000 | 86.9565 | 99.7259 | 3 | 3 | 20 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 8.1688 | 4.2857 | 86.9565 | 86.0606 | 15 | 335 | 20 | 3 | 2 | 66.6667 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 87.4816 | 88.0131 | 86.9565 | 72.4315 | 536 | 73 | 560 | 84 | 71 | 84.5238 | |
| jlack-gatk | INDEL | I1_5 | func_cds | het | 93.0233 | 100.0000 | 86.9565 | 63.4921 | 59 | 0 | 60 | 9 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_l125_m1_e0 | het | 93.0233 | 100.0000 | 86.9565 | 95.6274 | 20 | 0 | 20 | 3 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_l125_m2_e0 | het | 93.0233 | 100.0000 | 86.9565 | 96.2357 | 20 | 0 | 20 | 3 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_l125_m2_e1 | het | 93.0233 | 100.0000 | 86.9565 | 96.3259 | 20 | 0 | 20 | 3 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_l125_m2_e0 | het | 93.0233 | 100.0000 | 86.9565 | 97.1106 | 20 | 0 | 20 | 3 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_l125_m2_e1 | het | 93.0233 | 100.0000 | 86.9565 | 97.1744 | 20 | 0 | 20 | 3 | 0 | 0.0000 | |
| anovak-vg | INDEL | D1_5 | func_cds | het | 90.3955 | 94.1176 | 86.9565 | 42.5000 | 80 | 5 | 80 | 12 | 8 | 66.6667 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l125_m1_e0 | het | 93.0233 | 100.0000 | 86.9565 | 94.1476 | 20 | 0 | 20 | 3 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l125_m2_e0 | het | 93.0233 | 100.0000 | 86.9565 | 95.0324 | 20 | 0 | 20 | 3 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l125_m2_e1 | het | 93.0233 | 100.0000 | 86.9565 | 95.1782 | 20 | 0 | 20 | 3 | 0 | 0.0000 | |
| gduggal-snapvard | SNP | tv | tech_badpromoters | * | 85.8248 | 84.7222 | 86.9565 | 55.7692 | 61 | 11 | 60 | 9 | 1 | 11.1111 | |
| jmaeng-gatk | INDEL | I1_5 | func_cds | het | 93.0233 | 100.0000 | 86.9565 | 63.4921 | 59 | 0 | 60 | 9 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 58.8235 | 44.4444 | 86.9565 | 97.3714 | 4 | 5 | 20 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | HG002complexvar | hetalt | 57.7977 | 43.2836 | 86.9565 | 69.5364 | 145 | 190 | 40 | 6 | 6 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 58.8235 | 44.4444 | 86.9565 | 67.1429 | 20 | 25 | 20 | 3 | 3 | 100.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_siren | * | 81.2847 | 76.3062 | 86.9582 | 90.3597 | 2293 | 712 | 2307 | 346 | 22 | 6.3584 | |
| ciseli-custom | INDEL | * | * | het | 87.9280 | 88.9146 | 86.9631 | 62.2120 | 172609 | 21520 | 174074 | 26096 | 13945 | 53.4373 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 91.5617 | 96.6667 | 86.9688 | 73.4387 | 319 | 11 | 307 | 46 | 35 | 76.0870 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 92.7350 | 99.3135 | 86.9739 | 48.2902 | 434 | 3 | 434 | 65 | 65 | 100.0000 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 92.7350 | 99.3135 | 86.9739 | 48.6097 | 434 | 3 | 434 | 65 | 65 | 100.0000 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 92.7350 | 99.3135 | 86.9739 | 48.2902 | 434 | 3 | 434 | 65 | 65 | 100.0000 | |