PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
42551-42600 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 67.7419 | 56.0000 | 85.7143 | 83.1325 | 14 | 11 | 12 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l100_m0_e0 | * | 66.6667 | 54.5455 | 85.7143 | 78.1250 | 6 | 5 | 6 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l125_m1_e0 | het | 75.0000 | 66.6667 | 85.7143 | 78.7879 | 6 | 3 | 6 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l125_m2_e0 | het | 75.0000 | 66.6667 | 85.7143 | 80.5556 | 6 | 3 | 6 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l125_m2_e1 | het | 75.0000 | 66.6667 | 85.7143 | 80.5556 | 6 | 3 | 6 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l150_m1_e0 | * | 66.6667 | 54.5455 | 85.7143 | 85.4167 | 6 | 5 | 6 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l150_m2_e0 | * | 66.6667 | 54.5455 | 85.7143 | 86.7925 | 6 | 5 | 6 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l150_m2_e1 | * | 66.6667 | 54.5455 | 85.7143 | 86.7925 | 6 | 5 | 6 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_l150_m1_e0 | het | 92.3077 | 100.0000 | 85.7143 | 97.2973 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_l150_m2_e0 | het | 92.3077 | 100.0000 | 85.7143 | 97.5524 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_l150_m2_e1 | het | 92.3077 | 100.0000 | 85.7143 | 97.5524 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l125_m0_e0 | * | 82.7586 | 80.0000 | 85.7143 | 96.2466 | 12 | 3 | 12 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l125_m1_e0 | * | 88.0734 | 90.5660 | 85.7143 | 92.6606 | 48 | 5 | 48 | 8 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l125_m2_e0 | * | 88.0734 | 90.5660 | 85.7143 | 93.5409 | 48 | 5 | 48 | 8 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l125_m2_e1 | * | 88.0734 | 90.5660 | 85.7143 | 93.7079 | 48 | 5 | 48 | 8 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l150_m2_e1 | * | 87.2727 | 88.8889 | 85.7143 | 96.1433 | 24 | 3 | 24 | 4 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_l125_m0_e0 | * | 92.3077 | 100.0000 | 85.7143 | 96.3351 | 12 | 0 | 12 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 92.3077 | 100.0000 | 85.7143 | 99.6897 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 90.5660 | 96.0000 | 85.7143 | 92.3706 | 24 | 1 | 24 | 4 | 2 | 50.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | map_l125_m0_e0 | * | 92.3077 | 100.0000 | 85.7143 | 97.3180 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | map_l150_m1_e0 | het | 92.3077 | 100.0000 | 85.7143 | 95.8824 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | map_l150_m2_e0 | het | 92.3077 | 100.0000 | 85.7143 | 96.4467 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | map_l150_m2_e1 | het | 92.3077 | 100.0000 | 85.7143 | 96.4824 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | map_l150_m0_e0 | * | 80.0000 | 75.0000 | 85.7143 | 96.7136 | 6 | 2 | 6 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | map_l150_m1_e0 | het | 92.3077 | 100.0000 | 85.7143 | 95.5414 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | map_l150_m2_e0 | het | 92.3077 | 100.0000 | 85.7143 | 96.0000 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | map_l150_m2_e1 | het | 92.3077 | 100.0000 | 85.7143 | 96.0452 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 92.3077 | 100.0000 | 85.7143 | 92.0455 | 6 | 0 | 6 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 92.3077 | 100.0000 | 85.7143 | 99.6584 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l150_m1_e0 | het | 92.3077 | 100.0000 | 85.7143 | 94.4882 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l150_m2_e0 | het | 92.3077 | 100.0000 | 85.7143 | 95.2703 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l150_m2_e1 | het | 92.3077 | 100.0000 | 85.7143 | 95.3020 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l150_m0_e0 | * | 80.0000 | 75.0000 | 85.7143 | 96.1326 | 6 | 2 | 6 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 92.3077 | 100.0000 | 85.7143 | 92.6316 | 6 | 0 | 6 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l125_m0_e0 | * | 92.3077 | 100.0000 | 85.7143 | 95.6113 | 12 | 0 | 12 | 2 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | map_l125_m0_e0 | * | 92.3077 | 100.0000 | 85.7143 | 96.5000 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 91.7238 | 98.6053 | 85.7401 | 86.4136 | 6787 | 96 | 6163 | 1025 | 59 | 5.7561 | |
| ciseli-custom | SNP | * | map_l125_m1_e0 | * | 80.8628 | 76.5085 | 85.7426 | 76.0516 | 34679 | 10648 | 34610 | 5755 | 1482 | 25.7515 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 77.6395 | 70.9330 | 85.7466 | 65.4687 | 593 | 243 | 758 | 126 | 94 | 74.6032 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 89.4763 | 93.5448 | 85.7470 | 50.2621 | 4159 | 287 | 3742 | 622 | 558 | 89.7106 | |
| gduggal-snapplat | INDEL | * | segdup | * | 77.9673 | 71.4789 | 85.7514 | 96.5099 | 1827 | 729 | 1980 | 329 | 27 | 8.2067 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 85.7504 | 85.7485 | 85.7523 | 74.5958 | 3225 | 536 | 3220 | 535 | 212 | 39.6262 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 85.7504 | 85.7485 | 85.7523 | 74.5958 | 3225 | 536 | 3220 | 535 | 212 | 39.6262 | |
| hfeng-pmm1 | INDEL | D6_15 | HG002compoundhet | het | 82.2937 | 79.0888 | 85.7692 | 65.6236 | 677 | 179 | 669 | 111 | 108 | 97.2973 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 83.2248 | 80.8271 | 85.7692 | 82.1796 | 215 | 51 | 223 | 37 | 34 | 91.8919 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 56.6114 | 42.2485 | 85.7701 | 63.4733 | 1537 | 2101 | 1537 | 255 | 235 | 92.1569 | |
| ciseli-custom | INDEL | D1_5 | HG002complexvar | het | 87.0231 | 88.2917 | 85.7906 | 58.0288 | 18332 | 2431 | 18318 | 3034 | 650 | 21.4239 | |
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 89.8295 | 94.2654 | 85.7923 | 82.5729 | 1726 | 105 | 1727 | 286 | 3 | 1.0490 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 89.6142 | 93.7888 | 85.7955 | 36.9176 | 151 | 10 | 151 | 25 | 25 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 83.2380 | 80.8271 | 85.7971 | 78.5980 | 215 | 51 | 296 | 49 | 48 | 97.9592 | |