PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
42451-42500 / 86044 show all | |||||||||||||||
| ckim-dragen | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 85.7143 | 84.4444 | 0 | 0 | 6 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l125_m0_e0 | * | 63.1579 | 50.0000 | 85.7143 | 95.7055 | 6 | 6 | 6 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D6_15 | func_cds | * | 84.7059 | 83.7209 | 85.7143 | 51.7241 | 36 | 7 | 36 | 6 | 2 | 33.3333 | |
| ciseli-custom | INDEL | D6_15 | tech_badpromoters | het | 70.5882 | 60.0000 | 85.7143 | 58.8235 | 6 | 4 | 6 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 48.9796 | 34.2857 | 85.7143 | 88.7097 | 12 | 23 | 12 | 2 | 1 | 50.0000 | |
| ciseli-custom | SNP | * | segdup | hetalt | 85.7143 | 85.7143 | 85.7143 | 95.0704 | 6 | 1 | 6 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l150_m0_e0 | * | 80.0000 | 75.0000 | 85.7143 | 96.6825 | 6 | 2 | 6 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l250_m2_e0 | * | 80.0000 | 75.0000 | 85.7143 | 97.6027 | 6 | 2 | 6 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l250_m2_e1 | * | 80.0000 | 75.0000 | 85.7143 | 97.6898 | 6 | 2 | 6 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l125_m0_e0 | * | 92.3077 | 100.0000 | 85.7143 | 97.6351 | 12 | 0 | 12 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D1_5 | map_l250_m1_e0 | * | 91.5531 | 98.2456 | 85.7143 | 96.6701 | 168 | 3 | 168 | 28 | 1 | 3.5714 | |
| ckim-gatk | INDEL | D6_15 | map_l250_m0_e0 | * | 92.3077 | 100.0000 | 85.7143 | 98.3452 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l125_m0_e0 | * | 92.3077 | 100.0000 | 85.7143 | 97.9472 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l150_m1_e0 | het | 92.3077 | 100.0000 | 85.7143 | 97.0833 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l150_m2_e0 | het | 92.3077 | 100.0000 | 85.7143 | 97.4074 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l150_m2_e1 | het | 92.3077 | 100.0000 | 85.7143 | 97.4170 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I6_15 | map_l250_m2_e0 | * | 80.0000 | 75.0000 | 85.7143 | 98.4091 | 6 | 2 | 6 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | I6_15 | map_l250_m2_e1 | * | 80.0000 | 75.0000 | 85.7143 | 98.4783 | 6 | 2 | 6 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_l100_m2_e0 | * | 88.8889 | 92.3077 | 85.7143 | 94.7269 | 24 | 2 | 24 | 4 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_l100_m2_e1 | * | 88.8889 | 92.3077 | 85.7143 | 94.7955 | 24 | 2 | 24 | 4 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_l150_m1_e0 | het | 92.3077 | 100.0000 | 85.7143 | 95.5414 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_l150_m2_e0 | het | 92.3077 | 100.0000 | 85.7143 | 96.1749 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_l150_m2_e1 | het | 92.3077 | 100.0000 | 85.7143 | 96.1749 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I6_15 | map_l125_m0_e0 | homalt | 92.3077 | 100.0000 | 85.7143 | 91.4634 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | * | decoy | het | 92.3077 | 100.0000 | 85.7143 | 99.9767 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_l125_m0_e0 | * | 92.3077 | 100.0000 | 85.7143 | 97.1074 | 12 | 0 | 12 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l150_m0_e0 | * | 80.0000 | 75.0000 | 85.7143 | 97.1660 | 6 | 2 | 6 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l250_m2_e0 | * | 80.0000 | 75.0000 | 85.7143 | 97.8593 | 6 | 2 | 6 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l250_m2_e1 | * | 80.0000 | 75.0000 | 85.7143 | 97.9532 | 6 | 2 | 6 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l125_m0_e0 | * | 92.3077 | 100.0000 | 85.7143 | 96.9298 | 12 | 0 | 12 | 2 | 0 | 0.0000 | |
| anovak-vg | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 85.7143 | 96.5000 | 0 | 0 | 6 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | map_l250_m0_e0 | * | 84.5070 | 83.3333 | 85.7143 | 97.8125 | 5 | 1 | 6 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | map_l250_m2_e0 | homalt | 92.3077 | 100.0000 | 85.7143 | 94.2149 | 6 | 0 | 6 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | map_l250_m2_e1 | homalt | 92.3077 | 100.0000 | 85.7143 | 94.2623 | 6 | 0 | 6 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | I16_PLUS | map_siren | het | 21.4286 | 12.2449 | 85.7143 | 75.8621 | 6 | 43 | 6 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l150_m1_e0 | het | 92.3077 | 100.0000 | 85.7143 | 96.1957 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l150_m2_e0 | het | 92.3077 | 100.0000 | 85.7143 | 96.6667 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l150_m2_e1 | het | 92.3077 | 100.0000 | 85.7143 | 96.6825 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | map_l150_m0_e0 | * | 80.0000 | 75.0000 | 85.7143 | 97.0833 | 6 | 2 | 6 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | map_l250_m2_e0 | * | 80.0000 | 75.0000 | 85.7143 | 97.7987 | 6 | 2 | 6 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | map_l250_m2_e1 | * | 80.0000 | 75.0000 | 85.7143 | 97.8979 | 6 | 2 | 6 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 85.7143 | 98.0716 | 0 | 0 | 6 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l125_m2_e0 | het | 87.8049 | 90.0000 | 85.7143 | 97.6325 | 18 | 2 | 18 | 3 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l125_m2_e1 | het | 87.8049 | 90.0000 | 85.7143 | 97.6796 | 18 | 2 | 18 | 3 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l250_m0_e0 | het | 82.7586 | 80.0000 | 85.7143 | 98.8362 | 12 | 3 | 12 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l150_m0_e0 | * | 72.2892 | 62.5000 | 85.7143 | 97.4729 | 5 | 3 | 6 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 87.2727 | 88.8889 | 85.7143 | 97.6549 | 24 | 3 | 24 | 4 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l100_m0_e0 | * | 81.4941 | 77.6699 | 85.7143 | 87.9676 | 80 | 23 | 102 | 17 | 16 | 94.1176 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l150_m2_e0 | * | 41.3793 | 27.2727 | 85.7143 | 78.7879 | 3 | 8 | 6 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l150_m2_e1 | * | 41.3793 | 27.2727 | 85.7143 | 79.4118 | 3 | 8 | 6 | 1 | 1 | 100.0000 | |