PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
42401-42450 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | INDEL | D6_15 | map_l250_m0_e0 | * | 92.3077 | 100.0000 | 85.7143 | 97.4910 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | * | map_l250_m1_e0 | hetalt | 92.3077 | 100.0000 | 85.7143 | 97.7564 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | * | map_l250_m2_e0 | hetalt | 92.3077 | 100.0000 | 85.7143 | 98.1333 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | * | map_l250_m2_e1 | hetalt | 92.3077 | 100.0000 | 85.7143 | 98.1771 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 90.5660 | 96.0000 | 85.7143 | 87.2727 | 24 | 1 | 24 | 4 | 3 | 75.0000 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 79.8362 | 74.7126 | 85.7143 | 54.9550 | 845 | 286 | 600 | 100 | 84 | 84.0000 | |
| ghariani-varprowl | INDEL | * | decoy | het | 92.3077 | 100.0000 | 85.7143 | 99.9761 | 6 | 0 | 6 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 38.2166 | 24.5902 | 85.7143 | 80.9783 | 120 | 368 | 120 | 20 | 20 | 100.0000 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 85.7143 | 85.7143 | 85.7143 | 99.5760 | 6 | 1 | 6 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 54.5455 | 40.0000 | 85.7143 | 99.0358 | 6 | 9 | 6 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 54.5455 | 40.0000 | 85.7143 | 99.0463 | 6 | 9 | 6 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | tech_badpromoters | homalt | 75.0000 | 66.6667 | 85.7143 | 65.0000 | 6 | 3 | 6 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D6_15 | map_l150_m0_e0 | * | 49.0706 | 34.3750 | 85.7143 | 98.0609 | 11 | 21 | 6 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 51.5337 | 36.8421 | 85.7143 | 98.8942 | 7 | 12 | 6 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 51.5337 | 36.8421 | 85.7143 | 98.9114 | 7 | 12 | 6 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | I1_5 | tech_badpromoters | homalt | 60.0000 | 46.1538 | 85.7143 | 75.8621 | 6 | 7 | 6 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l100_m0_e0 | homalt | 59.7285 | 45.8333 | 85.7143 | 82.2785 | 11 | 13 | 12 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 22.9299 | 13.2353 | 85.7143 | 26.3158 | 9 | 59 | 12 | 2 | 2 | 100.0000 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 13.4283 | 7.2848 | 85.7143 | 44.0000 | 11 | 140 | 12 | 2 | 2 | 100.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 75.0000 | 66.6667 | 85.7143 | 98.7973 | 6 | 3 | 6 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 85.7143 | 92.0904 | 0 | 0 | 12 | 2 | 1 | 50.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l125_m0_e0 | * | 92.3077 | 100.0000 | 85.7143 | 95.3177 | 12 | 0 | 12 | 2 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 76.3006 | 68.7500 | 85.7143 | 66.6667 | 11 | 5 | 12 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | I1_5 | tech_badpromoters | * | 83.7209 | 81.8182 | 85.7143 | 60.3774 | 18 | 4 | 18 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 0.0000 | 85.7143 | 94.4000 | 0 | 0 | 12 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 0.0000 | 0.0000 | 85.7143 | 89.2308 | 0 | 0 | 6 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l150_m0_e0 | * | 85.7143 | 85.7143 | 85.7143 | 93.0000 | 6 | 1 | 6 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l150_m0_e0 | het | 85.7143 | 85.7143 | 85.7143 | 86.7925 | 6 | 1 | 6 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l250_m1_e0 | * | 48.0000 | 33.3333 | 85.7143 | 97.3485 | 6 | 12 | 6 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l250_m2_e0 | * | 41.3793 | 27.2727 | 85.7143 | 97.7346 | 6 | 16 | 6 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l250_m2_e1 | * | 41.3793 | 27.2727 | 85.7143 | 97.7848 | 6 | 16 | 6 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 68.5714 | 57.1429 | 85.7143 | 76.6667 | 76 | 57 | 78 | 13 | 9 | 69.2308 | |
| ckim-vqsr | INDEL | I16_PLUS | map_l125_m0_e0 | * | 92.3077 | 100.0000 | 85.7143 | 97.9472 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | map_l150_m1_e0 | het | 92.3077 | 100.0000 | 85.7143 | 97.0833 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | map_l150_m2_e0 | het | 92.3077 | 100.0000 | 85.7143 | 97.4074 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | map_l150_m2_e1 | het | 92.3077 | 100.0000 | 85.7143 | 97.4170 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 90.1734 | 95.1220 | 85.7143 | 76.3021 | 78 | 4 | 78 | 13 | 13 | 100.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l150_m1_e0 | het | 92.3077 | 100.0000 | 85.7143 | 96.3351 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l150_m2_e0 | het | 92.3077 | 100.0000 | 85.7143 | 96.8037 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l150_m2_e1 | het | 92.3077 | 100.0000 | 85.7143 | 96.8182 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_l150_m0_e0 | * | 80.0000 | 75.0000 | 85.7143 | 97.2332 | 6 | 2 | 6 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_l250_m2_e0 | * | 80.0000 | 75.0000 | 85.7143 | 97.8852 | 6 | 2 | 6 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_l250_m2_e1 | * | 80.0000 | 75.0000 | 85.7143 | 97.9769 | 6 | 2 | 6 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 80.0000 | 75.0000 | 85.7143 | 99.8799 | 12 | 4 | 12 | 2 | 0 | 0.0000 | |
| egarrison-hhga | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 92.3077 | 100.0000 | 85.7143 | 81.5789 | 6 | 0 | 6 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 92.3077 | 100.0000 | 85.7143 | 93.1596 | 1 | 0 | 18 | 3 | 1 | 33.3333 | |
| cchapple-custom | INDEL | D6_15 | map_l250_m0_e0 | * | 92.3077 | 100.0000 | 85.7143 | 97.2112 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I1_5 | map_l250_m0_e0 | het | 86.1878 | 86.6667 | 85.7143 | 98.1912 | 13 | 2 | 12 | 2 | 0 | 0.0000 | |
| ciseli-custom | SNP | tv | segdup | hetalt | 85.7143 | 85.7143 | 85.7143 | 95.0704 | 6 | 1 | 6 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 85.7143 | 84.4444 | 0 | 0 | 6 | 1 | 1 | 100.0000 | |